# Higher-order interactions in neuronal function: From genes to ionic currents in biophysical models

**Authors:** Maria Reva, Alexis Arnaudon, Mickael Zbili, Abdullah Makkeh, Henry Markram, Jean-Marc Goaillard, Werner Van Geit

PMC · DOI: 10.1073/pnas.2500048122 · 2025-09-29

## TL;DR

This paper explores how combinations of ion channels shape neuronal electrical identities, revealing complex interactions between genes and biophysical models.

## Contribution

The study introduces a novel approach combining biophysical models and single-cell gene expression data to uncover synergistic and redundant interactions in neuronal function.

## Key findings

- Synergy in neuronal activity arises from diverse, decorrelated ion channel combinations.
- Redundancy dominates when gene expression or model parameters are tightly coregulated.
- A small subset of ion channel genes captures essential variability across neuronal subtypes.

## Abstract

How neurons acquire their electrical identities is a central question in neuroscience. This study shows that combinations of ion channels interact in complex, high-dimensional ways to shape neuronal activity. By combining neuronal models with single-cell gene expression data, we reveal that the balance between synergy and redundancy depends on the statistical structure of underlying variability. Synergy emerges in diverse, decorrelated ensembles, while redundancy dominates when gene expression or model parameters are tightly coregulated or form subclusters. Notably, a small subset of ion channel genes captures essential variability across neuronal subtypes, highlighting how compact molecular programs can give rise to diverse electrical identities. These findings link statistical organization to neuronal function, offering insight into what makes each neuron type unique.

Neuronal firing patterns are the consequence of precise variations in neuronal membrane potential, which are themselves shaped by multiple ionic currents. In this study, we use biophysical models, statistical methods, and information theory to explore the interaction between these ionic currents and neuron electrophysiological phenotype. We created numerous electrical models with diverse firing patterns. By analyzing these models, we identified intricate relationships between model parameters and electrical features. Our findings show that neuronal activity is often influenced by multiple biophysical model parameters, in a nonadditive (i.e. synergistic) fashion. When comparing this with single-cell RNAseq data, we found a contrasting structure: gene expression profiles were dominated by redundancy, reflecting differences in regulatory constraints and sampling diversity. This research sheds light on the complex links between biophysical parameters and neuronal phenotypes.

## Full-text entities

- **Genes:** Cdh13 (cadherin 13) [NCBI Gene 12554] {aka 4932416G01Rik, Cdht, Tcad}, Sst (somatostatin) [NCBI Gene 20604] {aka SOM, SRIF, SS, Smst}, Kcnh7 (potassium voltage-gated channel, subfamily H (eag-related), member 7) [NCBI Gene 170738] {aka 9330137I11Rik, Kv11.3, erg3}, Scn1a (sodium channel, voltage-gated, type I, alpha) [NCBI Gene 20265] {aka B230332M13, Nav1.1}, Hcn1 (hyperpolarization activated cyclic nucleotide gated potassium channel 1) [NCBI Gene 15165] {aka Bcng1, C630013B14Rik, HAC2}, Sparcl1 (SPARC-like 1) [NCBI Gene 13602] {aka Ecm2, Sc1, hevin, mast9}, Scnn1a (sodium channel, nonvoltage-gated 1 alpha) [NCBI Gene 20276] {aka ENaC, SCNEA, Scnn1, mENaC}, Pvalb (parvalbumin) [NCBI Gene 19293] {aka PV, Parv, Pva}, Samd3 (sterile alpha motif domain containing 3) [NCBI Gene 268288] {aka Gm623}, Vip (vasoactive intestinal polypeptide) [NCBI Gene 22353], Calb1 (calbindin 1) [NCBI Gene 12307] {aka Brain-2, CB, Calb, Calb-1}, Kcnn2 (potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2) [NCBI Gene 140492] {aka KCa2.2, SK2, SKCA2, bc, fri}, Calb2 (calbindin 2) [NCBI Gene 12308] {aka CR}, Gpbar1 (G protein-coupled bile acid receptor 1) [NCBI Gene 227289] {aka BG37, GPCR, GPR131, M-BAR, TGR5}, Sncg (synuclein, gamma) [NCBI Gene 20618] {aka persyn}, Phb2 (prohibitin 2) [NCBI Gene 12034] {aka BAP, Bap37, Bcap37, REA}, Lamp5 (lysosomal-associated membrane protein family, member 5) [NCBI Gene 76161] {aka 3110035N03Rik, 6330527O06Rik, BAD-LAMP, LAMP-5}, Chrna6 (cholinergic receptor, nicotinic, alpha polypeptide 6) [NCBI Gene 11440] {aka Acra6, Nica6}, Kcnc1 (potassium voltage gated channel, Shaw-related subfamily, member 1) [NCBI Gene 16502] {aka C230009H10Rik, KShIIIB, KV4, Kcr2-1, Kv3.1, NGK2}
- **Diseases:** RMP (MESH:D015433), C) MI (OMIM:211750), neurological disorders (MESH:D009461), L5PC (MESH:D002292), cAC (MESH:D014202)
- **Chemicals:** PNAS (MESH:D020135), Calcium (MESH:D002118), Ca2+ (-), sodium (MESH:D012964), potassium (MESH:D011188), chloride (MESH:D002712)
- **Species:** Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** L5PC — Mus musculus (Mouse), Transformed cell line (CVCL_A1LI), cAC — Mus musculus (Mouse), Factor-dependent cell line (CVCL_5284)

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12519081/full.md

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Source: https://tomesphere.com/paper/PMC12519081