# PGK1: A Common Biomarker and Therapeutic Target Linking Sarcopenia and Osteoporosis Through Fibroblast‐Mediated Pathways

**Authors:** Kun Zhang, Hailong Li, Xinhong Chen, Ping Tang, Meng Wang, Chunting Yang, Rong Su, Xiaqin Gao, Fan Zhang, Juan Han

PMC · DOI: 10.1049/syb2.70037 · IET Systems Biology · 2025-10-13

## TL;DR

This study identifies PGK1 as a shared gene in sarcopenia and osteoporosis, suggesting it as a potential diagnostic and treatment target.

## Contribution

PGK1 is newly identified as a common biomarker and therapeutic target linking sarcopenia and osteoporosis via fibroblast pathways.

## Key findings

- PGK1 is consistently downregulated in both sarcopenia and osteoporosis.
- Lamivudine is identified as a potential therapeutic targeting PGK1.
- PGK1 is primarily enriched in fibroblasts within skeletal muscle.

## Abstract

Sarcopenia and osteoporosis share pathophysiological links, but their co‐occurrence mechanisms remain unclear. This study aimed to identify molecular mediators of their co‐development using bioinformatics. Datasets for sarcopenia (GSE56815) and osteoporosis (GSE9103) were retrieved from GEO. Differentially expressed genes (DEGs) were analysed via edgeR and limma. Gene ontology (GO), Kyoto encyclopaedia of genes and genomes (KEGG) and weighted gene co‐expression network analysis (WGCNA) identified shared pathways and hub genes. Protein–protein interaction (PPI) networks were constructed using STRING and Cytoscape. We validated hub genes in independent datasets (GSE13850, GSE8479) and assessed via ROC curves. Immune infiltration, single‐cell analysis and drug prediction were performed. We identified 134 common DEGs (30 upregulated, 104 downregulated). WGCNA and PPI analysis revealed 14 hub genes (APOE, CDK2, PGK1, HRAS, RUNX2 etc.), all with ROC‐AUC > 0.6. PGK1 was consistently downregulated in both diseases and linked to 21 miRNAs and six transcription factors (HSF1, TP53, JUN etc.). Single‐cell analysis localised PGK1 predominantly in skeletal muscle fibroblasts. DrugBank identified lamivudine as a potential PGK1‐targeting therapeutic. PGK1 emerged as a central downregulated gene in sarcopenia and osteoporosis, enriched in fibroblasts and modulated by lamivudine. These findings highlight PGK1 as a shared diagnostic and therapeutic target, offering insights into musculoskeletal crosstalk.

A bioinformatic analysis identified 14 key genes, including APOE, CDK2, PGK1 and others, that are significantly associated with both sarcopenia and osteoporosis, with all showing an area under the curve > 0.6 for both conditions. PGK1 was confirmed as a central hub gene that is strongly down‐regulated in both sarcopenia and osteoporosis. Additionally, LAMIVUDINE was identified as a small molecule targeting PGK1, and single cell analysis revealed that PGK1 is primarily enriched in fibroblasts within skeletal muscle.

## Linked entities

- **Genes:** PGK1 (phosphoglycerate kinase 1) [NCBI Gene 5230], APOE (apolipoprotein E) [NCBI Gene 348], CDK2 (cyclin dependent kinase 2) [NCBI Gene 1017], HRAS (HRas proto-oncogene, GTPase) [NCBI Gene 3265], RUNX2 (RUNX family transcription factor 2) [NCBI Gene 860], HSF1 (heat shock transcription factor 1) [NCBI Gene 3297], TP53 (tumor protein p53) [NCBI Gene 7157], JUN (Jun proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 3725]
- **Chemicals:** lamivudine (PubChem CID 60825)
- **Diseases:** osteoporosis (MONDO:0005298)

## Full-text entities

- **Genes:** CDK2 [NCBI Gene 101093368], PGK1 [NCBI Gene 101087208], HRAS [NCBI Gene 751103], TP53 [NCBI Gene 493847], RUNX2 [NCBI Gene 101089612], HSF1 [NCBI Gene 101101364], JUN [NCBI Gene 101097261]
- **Diseases:** Osteoporosis (MESH:D010024), Sarcopenia (MESH:D055948)
- **Chemicals:** lamivudine (MESH:D019259)

## Full text

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## Figures

10 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12517354/full.md

## References

43 references — full list in the complete paper: https://tomesphere.com/paper/PMC12517354/full.md

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Source: https://tomesphere.com/paper/PMC12517354