# Genetic Variants Affect Distinct Metabolic Pathways in Pediatric Multisystem Inflammatory Syndrome and Severe COVID‐19

**Authors:** Alysson Henrique Urbanski, Flávia Cristina de Paula Freitas, Tiago Minuzzi Freire da Fontoura Gomes, Michelle Orane Schemberger, Bárbara Carvalho Santos dos Reis, Flavia Amêndola Anísio de Carvalho, Roberta Soares Faccion, Lucas de Almeida Machado, Deborah Antunes dos Santos, Daniela Prado Cunha, Margarida dos Santos Salú, Daniella Campelo Batalha Cox Moore, Mayra Marinho Presibella, Juliana Fontes Noguchi, Henrique Lira Borges, Lais Kimie Tomiura, Luiza Silva de Castro, Letícia Graziela Costa Santos, Esdras Matheus Gomes da Silva, Vinícius Da Silva Coutinho Parreira, Luis Gustavo Morello, Fabricio Klerynton Marchini, Maria Regina Tizzot, Mauricio Marcondes Ribas, Gilberto Pascolat, Carmen Australia Paredes Marcondes Ribas, Fábio Fernandes da Rocha Vicente, Alexandre Rossi Paschoal, Rubens Cat, Benilton de Sá Carvalho, Jaqueline Carvalho de Oliveira, Marcus F. Oliveira, Luiz Lehmann Coutinho, Acácia Maria Lourenço Francisco Nasr, Irina Nastassja Riediger, Jeanine Marie Nardin, Liya Regina Mikami, Ana Carolina Ramos Guimarães, Patricia Savio de Araujo‐Souza, Arnaldo Prata‐Barbosa, Zilton Farias Meira de Vasconcelos, Helisson Faoro, Hellen Geremias dos Santos, Fabio Passetti

PMC · DOI: 10.1002/jmv.70556 · Journal of Medical Virology · 2025-08-16

## TL;DR

This study finds that genetic variants linked to specific metabolic pathways are associated with severe pediatric cases of MIS-C and severe COVID-19.

## Contribution

The study identifies distinct genetic variants related to carbohydrate and cholesterol metabolism in severe pediatric MIS-C and COVID-19.

## Key findings

- Severe pediatric COVID-19 cases show enriched variants in genes related to glycogen breakdown.
- MIS-C patients exhibit enriched variants in genes involved in cholesterol and lipoprotein metabolism.
- The findings highlight potential genetic targets for understanding and treating these conditions.

## Abstract

The coronavirus disease 2019 (COVID‐19) pandemic has triggered a global health crisis, with over 700 million confirmed cases and at least 7 million deaths reported by early 2024. Children are less vulnerable to severe SARS‐CoV‐2 infection than adults and typically experience milder respiratory symptoms. However, a rare but significant complication, known as multisystem inflammatory syndrome in children (MIS‐C), can develop weeks after infection, characterized by a spectrum of inflammatory symptoms. This study employed whole‐exome sequencing and over‐representation analysis to identify genetic variants of potential clinical significance related to MIS‐C or severe COVID‐19 in a group of children with acute respiratory distress syndrome (ARDS), all of whom were unvaccinated for COVID‐19. We observed the enrichment of potentially pathogenic genetic variants in genes related to carbohydrate metabolism, particularly glycogen breakdown, in severe COVID‐19 pediatric patients, and in genes related to cholesterol and lipoprotein metabolism in MIS‐C patients. These findings offer insights into the genetic underpinnings of MIS‐C and severe COVID‐19, suggesting potential genes and biological pathways for further research.

## Linked entities

- **Diseases:** coronavirus disease 2019 (MONDO:0100096), multisystem inflammatory syndrome in children (MONDO:0100163), acute respiratory distress syndrome (MONDO:0006502)

## Full-text entities

- **Genes:** GAA (alpha glucosidase) [NCBI Gene 2548] {aka IOPD, LOPD, LYAG}, GANC (glucosidase alpha, neutral C) [NCBI Gene 2595], AMY2B (amylase alpha 2B) [NCBI Gene 280] {aka AMY2, AMY3, HXA}, ABCB4 (ATP binding cassette subfamily B member 4) [NCBI Gene 5244] {aka ABC21, GBD1, ICP3, MDR2, MDR2/3, MDR3}, GALT (galactose-1-phosphate uridylyltransferase) [NCBI Gene 2592], LRP1 (LDL receptor related protein 1) [NCBI Gene 4035] {aka A2MR, APOER, APR, CD91, DDH3, IGFBP-3R}, ABCA5 (ATP binding cassette subfamily A member 5) [NCBI Gene 23461] {aka ABC13, DEL17q24, EST90625, HTC3, HTGH}, CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, PHKA1 (phosphorylase kinase regulatory subunit alpha 1) [NCBI Gene 5255] {aka PHKA}, PYGM (glycogen phosphorylase, muscle associated) [NCBI Gene 5837] {aka GSD5}, APOA1 (apolipoprotein A1) [NCBI Gene 335] {aka AMYLD3, HPALP2, apo(a)}, ABCB11 (ATP binding cassette subfamily B member 11) [NCBI Gene 8647] {aka ABC16, BRIC2, BSEP, PFIC-2, PFIC2, PGY4}, LIPC (lipase C, hepatic type) [NCBI Gene 3990] {aka HDLCQ12, HL, HTGL}, MADCAM1 (mucosal vascular addressin cell adhesion molecule 1) [NCBI Gene 8174] {aka MACAM1}, LIPA (lipase A, lysosomal acid type) [NCBI Gene 3988] {aka CESD, LAL}, GALE (UDP-galactose-4-epimerase) [NCBI Gene 2582] {aka SDR1E1, THC13}, APOE (apolipoprotein E) [NCBI Gene 348] {aka AD2, APO-E, ApoE4, LDLCQ5, LPG}, ADIPOQ (adiponectin, C1Q and collagen domain containing) [NCBI Gene 9370] {aka ACDC, ACRP30, ADIPQTL1, ADPN, APM-1, APM1}, CFTR (CF transmembrane conductance regulator) [NCBI Gene 1080] {aka ABC35, ABCC7, CF, CFTR/MRP, MRP7, TNR-CFTR}, ACE2 (angiotensin converting enzyme 2) [NCBI Gene 59272] {aka ACEH}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, PGM1 (phosphoglucomutase 1) [NCBI Gene 5236] {aka CDG1T, GSD14}, NR1H3 (nuclear receptor subfamily 1 group H member 3) [NCBI Gene 10062] {aka LXR-a, LXRA, RLD-1}
- **Diseases:** galactosemia (MESH:D005693), Hypotension (MESH:D007022), conjunctivitis (MESH:D003231), Children (MESH:D015362), vomiting (MESH:D014839), hypoxemia (MESH:D000860), inflammation (MESH:D007249), death (MESH:D003643), abdominal pain (MESH:D015746), metabolic disorder (MESH:D008659), ARDS (MESH:D012128), Myocardial dysfunction (MESH:D006331), shock (MESH:D012769), diarrhea (MESH:D003967), coronary abnormalities (MESH:D003327), Mendelian disorders (MESH:D025861), cystic fibrosis (MESH:D003550), MIS-C (MESH:C000705967), gastrointestinal symptoms (MESH:D012817), cardiovascular complications (MESH:D002318), rash (MESH:D005076), fever (MESH:D005334), Coagulopathy (MESH:D001778), immune disorders (MESH:D007154), hypoxemic respiratory failure (MESH:D012131), Hypertrophic cardiomyopathy (MESH:D002312), heart failure (MESH:D006333), 19 (MESH:D000094024), Kawasaki (MESH:D009080), SARS-CoV-2 (MESH:D000086382), pneumonia (MESH:D011014), symptoms (MESH:D012816), diabetes (MESH:D003920), overweight (MESH:D050177), Dilated cardiomyopathy (MESH:D002311), infected (MESH:D007239), Cardiomyopathy (MESH:D009202), bacterial sepsis (MESH:D001424), pericarditis (MESH:D010493), Arrhythmogenic right ventricular cardiomyopathy (MESH:D019571), myocarditis (MESH:D009205)
- **Chemicals:** NADPH (MESH:D009249), ATP (MESH:D000255), G6P (MESH:D019298), glucose-1-phosphate (MESH:C031590), UDP-galactose (MESH:D014531), tryptophan (MESH:D014364), Glycogen (MESH:D006003), Galactose (MESH:D005690), reactive oxygen species (MESH:D017382), threonine (MESH:D013912), bile acid (MESH:D001647), galactose-1-phosphate (MESH:C029973), phenylalanine (MESH:D010649), glutathione (MESH:D005978), citrate (MESH:D019343), glucose (MESH:D005947), sucrose (MESH:D013395), AMP (MESH:D000249), Carbohydrate (MESH:D002241), pentose phosphate (MESH:D010428), starch (MESH:D013213), isoleucine (MESH:D007532), hydrogen (MESH:D006859), carbon (MESH:D002244), UDP-glucose (MESH:D014532), lipid (MESH:D008055), CLR (MESH:D002784), 1-O-phosphono-alpha-d-glucopyranose (-), valine (MESH:D014633)
- **Species:** Homo sapiens (human, species) [taxon 9606], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049]
- **Mutations:** g.90982268 C > T, Ala365, g.186572432 A > G, g.22150183 T > G, Arg1162, g.48547481 C > T, g.16012594 G > A, g.58834770 T > C, g.42614036 A > T, p.Phe508del, g.87041333 C > T, p.Tyr3245Cys, g.67251772 T > A, g.64120045 C > T, g.117199646_117199648del, g.78078651 G > A, G6P, Gln188, g.21113475 T > C, p.Ile165Thr, g.71802375 C > T, g.24124241 C > T, g.104117852 G > A, g.104116544 C > A, p.Gln298=, g.17164852 C > T, g.55505647 G > T, Tyr-to-Cys, g.104142911 G > A, g.57593052 A > G, g.116706940_116706942del, Ile285Phe, Leu206, Arg517, g.164739053 C > T, g.47282095 G > A, g.44575482 A > T, g.45412040 C > T, g.11221357 G > A, g.91420785 G > T
- **Cell lines:** sCOVID-19 — Homo sapiens (Human), Transformed cell line (CVCL_K781)

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12357531/full.md

## References

62 references — full list in the complete paper: https://tomesphere.com/paper/PMC12357531/full.md

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Source: https://tomesphere.com/paper/PMC12357531