# A chromosome-level genome assembly of Sarcophaga princeps Wiedemann, 1830 (Diptera: Sarcophagidae)

**Authors:** Liangliang Li, Yinghui Wang, Yingna Zhang, Wenxuan Huang, Shujin Li, Yu Wang

PMC · DOI: 10.1038/s41597-025-05785-0 · Scientific Data · 2025-08-15

## TL;DR

This paper presents a high-quality chromosome-level genome assembly for Sarcophaga princeps, a fly species important in forensic entomology.

## Contribution

The study provides the first chromosome-level genome assembly for Sarcophaga princeps using advanced sequencing technologies.

## Key findings

- The genome assembly is 628.56 Mb with 99.87% of the sequence anchored to seven chromosomes.
- BUSCO analysis shows 99.10% completeness with 94.4% of genes in single copy.
- Repetitive sequences make up 333.04 Mb of the genome, and 14,348 protein-coding genes were identified.

## Abstract

Sarcosaprophagous insects play a pivotal role in forensic entomology, particularly in estimation of the postmortem interval (PMI). Among them, Sarcophaga princeps Wiedemann, 1830 (Diptera: Sarcophagidae), demonstrates distinct ecological traits such as larviposition and the ability to colonize buried remains. Even so, it has been hard to learn more about its molecular biology since a high-quality genome assembly is missing. This research uses PacBio HiFi, Illumina and Hi-C methods to produce a chromosome-level genome assembly for S. princeps. The resulting genome spans 628.56 Mb, with a scaffold N50 of 118.89 Mb, and 99.87% of the assembled sequence (627.74 Mb) successfully anchored to seven chromosomes. BUSCO analysis indicates that the genome is 99.10% complete, with 94.4% of genes present in single copy and 4.7% duplicated. Annotation of the genome identified 14,348 protein-coding genes and found that repetitive sequences occupy 333.04 Mb of the genome. The availability of this high-resolution genomic resource will greatly improve future research on the evolution, habitats and genomics of the Sarcophagidae family.

## Linked entities

- **Species:** Sarcophaga princeps (taxon 411872)

## Full-text entities

- **Diseases:** death (MESH:D003643), hoof fly disease (MESH:C000719189)
- **Chemicals:** biotin (MESH:D001710), -dCTP (MESH:C024107), nitrogen (MESH:D009584), formaldehyde (MESH:D005557), TRIzol (MESH:C411644), MboI (-)
- **Species:** Anopheles gambiae (African malaria mosquito, species) [taxon 7165], Drosophila melanogaster (fruit fly, species) [taxon 7227], Lucilia cuprina (Australian sheep blowfly, species) [taxon 7375], Calliphoridae (blow flies, family) [taxon 7371], Capra hircus (domestic goat, species) [taxon 9925], Homo sapiens (human, species) [taxon 9606], Aedes aegypti (yellow fever mosquito, species) [taxon 7159], Sarcophaga bullata (grey fleshfly, species) [taxon 7385], Sarcophaga princeps (species) [taxon 411872], Sarcophagidae (flesh flies, family) [taxon 7381]

## Full text

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## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12356888/full.md

## References

3 references — full list in the complete paper: https://tomesphere.com/paper/PMC12356888/full.md

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Source: https://tomesphere.com/paper/PMC12356888