# Functionally deficient UBOX5 variants and primary angle-closure glaucoma

**Authors:** Zheng Li, Wee Ling Chng, Zhehao Liu, Tan Do, Masakazu Nakano, Li Jia Chen, Yunhua Loo, Anita S. Y. Chan, Fotis Topouzis, Monisha E. Nongpiur, Mineo Ozaki, Satoko Nakano, Toshiaki Kubota, Shamira A. Perera, Rahat Husain, Tina T. L. Wong, Ching-Yu Cheng, Ching Lin Ho, Khaled Abu-Amero, Hon-Tym Wong, Mônica Barbosa de Melo, Nguyen Do Thi Ngoc Hien, Nguyen Van Trinh, Nguyen Thi Thanh Huong, Yaakub Azhany, Rodolfo Perez-Grossmann, Poemen PM Chan, Kelsey V. Stuart, Mahantesh I. Biradar, Anita Szabo, Eleftherios Anastasopoulos, Dimitrios A. Giannoulis, Panagiota Ntonti, Evangelia Papakonstantinou, Alexandros Lambropoulos, Anthoula Chatzikyriakidou, Vassilis Kilintzis, Humaira Ayub, Shazia Micheal, Yee Yee Aung, Edgar U. Leuenberger, Antonio Fea, Naing Naing Mon, Amihan Anajao, Xuezhi Bi, Yee Jiun Kok, Rachel S. Chong, Pui-Yi Boey, Darrell Zi Jing Tan, Wendy Wan Ling Sin, Balram Chowbay, Chaw Chaw Khaing, Yin Mon Aung, Rigo Daniel Reyes, Evangelia S. Panagiotou, Dimitrios G. Mikropoulos, Irini C. Voudouragkaki, Georgios D. Panos, Zhicheng Xie, Xiao Yin Chen, Yi Ting Lim, Wee Yang Meah, Ying Shi Lee, Candice Ee Hua Ho, Pearlyn Mei Xin Yeo, Yoko Ikeda, Yuichi Tokuda, Masami Tanaka, Natsue Omi, Morio Ueno, José P. C. de Vasconcellos, Vital P. Costa, Ricardo Y. Abe, Bruno B. de Souza, Guillermo B. Fong, Vania V. Castro, Ricardo Fujita, Maria L. Guevara-Fujita, Farah Akhtar, Mahmood Ali, Mary Ann T. Catacutan, Irene R. Felarca, Chona S. Liao, Carlo Lavia, Hlaing May Than, Khin Thida Oo, Phyu P. Soe-Kyaw, Paolo Frezzotti, Francesca Pasutto, Raquel Quino, Zaw Minn-Din, Nay Lin Oo, Laura Dallorto, Saw Htoo Set, Vi Huyen Doan, Raheel Qamar, Jamil Miguel Neto, Saleh Al-Obeidan, Clement C. Tham, Kazuhiko Mori, Chie Sotozono, Shigeru Kinoshita, Anastasios G. Konstas, Ahmad Tajudin Liza-Sharmini, Juan C. Zenteno, Nhu Hon Do, Paul J. Foster, Kei Tashiro, Chi Pui Pang, Anthony P. Khawaja, Tin Aung, Zhenxun Wang, Chiea Chuen Khor

PMC · DOI: 10.1038/s41467-025-62775-x · Nature Communications · 2025-08-15

## TL;DR

Rare harmful changes in the UBOX5 gene increase the risk of primary angle-closure glaucoma, a major cause of blindness.

## Contribution

Identified UBOX5 as a novel gene associated with primary angle-closure glaucoma through rare variants and their functional impact on BIP ubiquitination.

## Key findings

- UBOX5 variants are associated with a 2.13-fold increased risk of primary angle-closure glaucoma.
- UBOX5 ubiquitinates BIP, and functionally deficient variants are enriched in affected individuals.
- Three individuals with functionally deficient UBOX5 variants were found in 208 cases but none in 600 controls.

## Abstract

Primary angle-closure glaucoma is a major cause of irreversible blindness worldwide afflicting >20 million people. Through whole exome sequencing, we analysed the association between gene-based burden of rare, protein-altering genetic variants and disease risk in 4,667 affected individuals and 5,473 unaffected controls. We tested genes surpassing exome-wide significance (P < 2.5 × 10-6) for replication in a further 2,519 cases and 472,189 controls. We observed carriers of rare, protein-altering variants at UBOX5 (observed in 154 out of 7,186 affected individuals [2.1%] and in 3,975 out of 477,197 unaffected controls [0.83%]) to be associated with 2.13-fold increased risk of PACG (95%ci, 1.69 – 2.69; P = 1.25 × 10-10). We performed substrate trapping assays coupled with mass spectrometry and observed Binding Immunoglobulin Protein (BIP) as a key substrate for UBOX5. Biological assays showed UBOX5 acts by ubiquitinating BIP. We evaluated the functional status of 35 UBOX5 variants and observed that functionally deficient variants were enriched in affected individuals compared to controls. We validated this finding in an independent collection where 3 persons carrying functionally deficient variants were observed out of 208 cases (1.4%), whereas none were observed in 600 controls. Our findings suggest the UBOX5—BIP signalling pathway might be involved in biology of primary angle-closure glaucoma.

Primary angle-closure glaucoma is a leading cause of blindness. Here, the authors identify rare deleterious variants in UBOX5 as risk factors and implicate BIP ubiquitination as a potential disease mechanism.

## Linked entities

- **Genes:** UBOX5 (U-box domain containing 5) [NCBI Gene 22888], GDF10 (growth differentiation factor 10) [NCBI Gene 2662]
- **Proteins:** GDF10 (growth differentiation factor 10)
- **Diseases:** primary angle-closure glaucoma (MONDO:0001868)

## Full-text entities

- **Genes:** Myc (Myc proto-oncogene, bHLH transcription factor) [NCBI Gene 17869] {aka Myc2, Niard, Nird, bHLHe39}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, Ubd (ubiquitin D) [NCBI Gene 24108] {aka FAT10}, Hspa5 (heat shock protein family A (Hsp70) member 5) [NCBI Gene 14828] {aka Bip, D2Wsu141e, D2Wsu17e, Grp78, Hsce70, SEZ-7}, Actb (actin, beta) [NCBI Gene 11461] {aka Actx, E430023M04Rik, beta-actin}, CANX (calnexin) [NCBI Gene 821] {aka CNX, IP90, P90}, HSPA5 (heat shock protein family A (Hsp70) member 5) [NCBI Gene 3309] {aka BIP, GRP78, HEL-S-89n}, HSPA1B (heat shock protein family A (Hsp70) member 1B) [NCBI Gene 3304] {aka HSP70-1, HSP70-1B, HSP70-2, HSP70.1, HSP70.2, HSP72}, UBD (ubiquitin like modifier D) [NCBI Gene 10537] {aka FAT10, UBD-3}, MUL1 (mitochondrial E3 ubiquitin protein ligase 1) [NCBI Gene 79594] {aka C1orf166, GIDE, MAPL, MULAN, RNF218}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, Canx (calnexin) [NCBI Gene 12330] {aka 1110069N15Rik, Cnx, D11Ertd153e}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, UBOX5 (U-box domain containing 5) [NCBI Gene 22888] {aka RNF37, UBCE7IP5, UIP5, hUIP5}, Ubox5 (U box domain containing 5) [NCBI Gene 140629] {aka 1500010O06Rik, C330018L13Rik, Rnf37, UIP5, Ubce7ip5, Ube7ip5}, HSPA8 (heat shock protein family A (Hsp70) member 8) [NCBI Gene 3312] {aka HEL-33, HEL-S-72p, HSC54, HSC70, HSC71, HSP71}, EREG (epiregulin) [NCBI Gene 2069] {aka EPR, ER, Ep}
- **Diseases:** Glaucoma (MESH:D005901), corneal edema (MESH:D015715), vomiting (MESH:D014839), GON (MESH:D009901), pupil block (MESH:D011681), blurring of vision (MESH:D014786), HSPs (MESH:C537483), nausea (MESH:D009325), neovascular glaucoma (MESH:D015355), retinal ganglion (MESH:D012173), blindness (MESH:D001766), APAC (MESH:D015812), ocular pain (MESH:D058447), optic nerve damage (MESH:D020221), conjunctival injection (MESH:D003229)
- **Chemicals:** EDTA (MESH:D004492), MG132 (MESH:C072553), KCl (MESH:D011189), Tu (MESH:D014415), HEPES (MESH:D006531), EGTA (MESH:D004533), CST (-), cycloheximide (MESH:D003513), DTT (MESH:D004229), Sucrose (MESH:D013395), DMSO (MESH:D004121), TG (MESH:D019284), MgCl2 (MESH:D015636)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** p. Thr148Ile, p. Val193Met, p. Arg529Gln, S465C, R301Q, p. Arg510Arg, D33N, p. Leu508Arg, p. Arg518Cys, K291R
- **Cell lines:** 293 — Homo sapiens (Human), Transformed cell line (CVCL_0045), CRL-3216 — Homo sapiens (Human), Turner syndrome, Transformed cell line (CVCL_9M67), NIH 3T3 — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0594), HEK — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_M624), CRL-1658 — Homo sapiens (Human), Nevoid basal cell carcinoma syndrome, Finite cell line (CVCL_2Z69)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12356834/full.md

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12356834/full.md

## References

5 references — full list in the complete paper: https://tomesphere.com/paper/PMC12356834/full.md

---
Source: https://tomesphere.com/paper/PMC12356834