# Determination of bioactive profile of Polygala vulgaris L. by GC-MS and molecular docking

**Authors:** Fatma Gönül Sezgin

PMC · DOI: 10.1186/s13065-025-01606-y · 2025-08-14

## TL;DR

This study explores the antioxidant properties and bioactive compounds in Polygala vulgaris L., suggesting its potential in reducing oxidative stress and fighting diseases.

## Contribution

The study combines GC-MS and molecular docking to explore the antioxidant and bioactive profile of Polygala vulgaris L.

## Key findings

- Significant antioxidant activity was observed in Polygala vulgaris L.
- Molecular docking suggests interactions with LIMP 2, potentially impacting Parkinson’s disease and enterovirus.
- GC-MS identified bioactive compounds in the methanol extract of the plant.

## Abstract

Plants, being immobile, are constantly exposed to various biotic and abiotic stresses, leading to the generation of reactive oxygen species (ROS) which disrupt cellular homeostasis and cause oxidative damage. To combat this, plants have evolved various enzymatic and non-enzymatic antioxidant mechanisms. This study investigates the enzymatic activities of key antioxidants in Polygala vulgaris L., a species within the Polygalaceae known for its medicinal properties. The enzymatic activities of), catalase (CAT), superoxide dismutase (SOD), manganese superoxide dismutase (MnSOD) and phenol oxidase (PO) were measured. Additionally, the content of malondialdehyde (MDA), a marker for oxidative stress, was determined. The methanol extract of P. vulgaris L. was analyzed using GC-MS to identify bioactive compounds, and molecular docking studies were conducted to assess the interactions and binding energies of these compounds with the lysosomal integral membrane protein-2 (LIMP 2). LIMP 2 interaction of the extract suggested that it may trigger Parkison’s disease and at the same time protect the organism from enterovirus invasion. Results indicated significant antioxidant activity in P. vulgaris L., with potential implications for its use in mitigating oxidative stress-related cellular damage. The study provides a comprehensive overview of the antioxidant defense mechanisms in P. vulgaris L. and underscores its potential for future pharmacological applications.

## Linked entities

- **Proteins:** SCARB2 (scavenger receptor class B member 2)
- **Chemicals:** malondialdehyde (PubChem CID 10964), methanol (PubChem CID 887)
- **Diseases:** Parkinson’s disease (MONDO:0005180)

## Full-text entities

- **Genes:** CAT [NCBI Gene 101093891], AKR1B1 (aldo-keto reductase family 1 member B) [NCBI Gene 231] {aka ADR, ALDR1, ALR2, AR}, SCARB2 (scavenger receptor class B member 2) [NCBI Gene 950] {aka AMRF, CD36L2, EPM4, HLGP85, LGP85, LIMP-2}, SOD2 (superoxide dismutase 2) [NCBI Gene 6648] {aka GC1, GClnc1, IPO-B, IPOB, MNSOD, MVCD6}, SOD1 (superoxide dismutase 1) [NCBI Gene 6647] {aka ALS, ALS1, HEL-S-44, IPOA, SOD, STAHP}, CAT (catalase) [NCBI Gene 847]
- **Diseases:** LIMP 2 related diseases (MESH:D016464), leukemic (MESH:D007938), inflammatory (MESH:D007249), Parkison's disease (MESH:D004194), Gaucher disease (MESH:D005776), PD (MESH:D010300), Parkinsonian symptoms (MESH:D010302), leishmaniasis (MESH:D007896), trypanosomiasis (MESH:D014352)
- **Chemicals:** Methyl butyrate (MESH:C043811), methanol (MESH:D000432), glucose (MESH:D005947), acetophenones (MESH:D000098), L-DOPA (MESH:D007980), ROS (MESH:D017382), TBA (MESH:C029684), Cu (MESH:D003300), water (MESH:D014867), EDTA (MESH:D004492), NaOH (MESH:D012972), Mn (MESH:D008345), amino acids (MESH:D000596), xanthine (MESH:D019820), Malonic acid (MESH:C030290), NaCN (MESH:D012966), heme (MESH:D006418), GluCer (MESH:D005963), Fe (MESH:D007501), o-quinone (MESH:C025225), sugar alcohol (MESH:D013402), 1,5-Anhydro-D-glucitol (MESH:C006584), sphingolipid (MESH:D013107), phosphate (MESH:D010710), MDA (MESH:D008315), 3' 5'-dimethoxy-4'-hydroxyacetophenone (-), Ni (MESH:D009532), H2O2 (MESH:D006861), molecular oxygen (MESH:D010100), Lipid (MESH:D008055), D-Glucitol (MESH:D013012), hydrogen (MESH:D006859), Zn (MESH:D015032), TCA (MESH:D014238), polyunsaturated fatty acids (MESH:D005231), superoxide (MESH:D013481)
- **Species:** Priapulus caudatus (species) [taxon 37621], Homo sapiens (human, species) [taxon 9606], Polygala vulgaris (common milkwort, species) [taxon 174553], Senega altomontana (species) [taxon 2583862], Enterovirus A71 (no rank) [taxon 39054], Senega molluginifolia (species) [taxon 2583899], P. japonica [taxon 656074], Enterovirus (genus) [taxon 12059], Meleagris gallopavo (common turkey, species) [taxon 9103]
- **Mutations:** C17- A, C16- A, C10- A, C6- A, C13- A

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12355824/full.md

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Source: https://tomesphere.com/paper/PMC12355824