# Alternative Splicing of Exon 23a in Neurofibromatosis Type 1 Pre‐mRNA: Its Contribution to the Protein Structure and Function of Neurofibromin

**Authors:** Annabelle G. Elsner Pacheco, Hua Lou

PMC · DOI: 10.1002/wrna.70021 · Wiley Interdisciplinary Reviews. RNA · 2025-08-14

## TL;DR

This paper reviews how alternative splicing of exon 23a in the NF1 gene affects neurofibromin's structure and function, particularly its RasGAP activity and role in brain tumor development.

## Contribution

The paper provides new insights into the structural and functional consequences of exon 23a inclusion in neurofibromin and its implications in glioma development.

## Key findings

- Cryo-EM structures of both isoforms of neurofibromin reveal why exon 23a inclusion reduces RasGAP activity.
- Altered splicing of exon 23a is linked to the development of high-grade glioma.
- Exon 23a inclusion disrupts neurofibromin trafficking to the membrane and interaction with RAS.

## Abstract

The neurofibromatosis type 1 (NF1) gene has 61 exons. The major alternative exon in NF1 pre‐mRNA is exon 23a. Skipping and inclusion of this exon produce isoform I and isoform II neurofibromin, respectively. When the alternative exon was discovered in 1993, several experiments conducted in yeast and human cell lines quickly led to the conclusion that inclusion of this exon reduced the RasGAP function of the neurofibromin protein by 5–10‐fold. Since then, research efforts on this seemingly important alternative splicing event have been sporadic, leaving many important questions unanswered, until after 2020 when several important papers related to the structure and function of exon 23a have been published. Two major advancements have been made. First, the cryo‐EM structures of the full‐length neurofibromin, of both isoforms, have been solved. More excitingly, the structure of isoform II neurofibromin that includes exon 23a provides important insight into why this isoform has reduced RasGAP activity. Second, the role of the altered splicing pattern of exon 23a in the development of high‐grade glioma (HGG) has been investigated. In this review, we start with the introduction of alternative splicing of exon 23a, its discovery, differential expression patterns, and regulatory mechanisms that control this alternative splicing event. Next, we discuss the structural differences between the two isoforms which give insight into the differing RasGAP activities. We then review the in vivo biological function of the regulated inclusion of exon 23a, focusing on cognitive behaviors and brain tumor development. Finally, we briefly discuss the future directions of studies on NF1 exon 23a.

This article is categorized under:
RNA Processing > Splicing Regulation/Alternative Splicing

RNA Processing > Splicing Regulation/Alternative Splicing

Isoform I and II of neurofibromin differ in the inclusion of exon 23a and their ability to regulate membrane‐bound RAS and consequent downstream pathways. It is predicted that the insertion of exon 23a disrupts trafficking of the protein to the membrane and/or with RAS itself.

## Linked entities

- **Genes:** NF1 (neurofibromin 1) [NCBI Gene 4763]
- **Proteins:** RASA1 (RAS p21 protein activator 1), ras (resistance to audiogenic seizures)
- **Diseases:** neurofibromatosis type 1 (MONDO:0018975), high-grade glioma (MONDO:0100342)

## Full-text entities

- **Genes:** H3c7 (H3 clustered histone 7) [NCBI Gene 260423] {aka H3.2-221, H3c13, H3c14, H3c15, H3c2, H3c3}, Spred1 (sprouty protein with EVH-1 domain 1, related sequence) [NCBI Gene 114715] {aka 5730461F13Rik}, Nf1 (neurofibromin 1) [NCBI Gene 24592], Celf3 (CUGBP, Elav-like family member 3) [NCBI Gene 78784] {aka 4930415M08Rik, BRUNOL1, CAGH4, ERDA4, ETR-1, Tnrc4}, Elavl3 (ELAV like RNA binding protein 3) [NCBI Gene 15571] {aka 2600009P04Rik, Huc, PLE21, mHuC}, Gart (phosphoribosylglycinamide formyltransferase) [NCBI Gene 14450] {aka Gaps, Prgs}, Rest (RE1-silencing transcription factor) [NCBI Gene 19712] {aka 2610008J04Rik, NRSF, REST4}, Nf1 (neurofibromin 1) [NCBI Gene 18015] {aka Dsk9, E030030H24Rik, Mhdadsk9, Nf-1}, RASA1 (RAS p21 protein activator 1) [NCBI Gene 5921] {aka CM-AVM, CMAVM, CMAVM1, GAP, PKWS, RASA}, NF1 (neurofibromin 1) [NCBI Gene 4763] {aka NFNS, VRNF, WSS}, Celf4 (CUGBP, Elav-like family member 4) [NCBI Gene 108013] {aka A230070D14Rik, BRUNOL-4, Brul4, Brunol4, C130060B05Rik}, Ephb1 (Eph receptor B1) [NCBI Gene 24338] {aka Ephb2, Erk, elk}, Rasa1 (RAS p21 protein activator 1) [NCBI Gene 218397] {aka Gap, RasGAP, Rasa}, Mbnl1 (muscleblind like splicing regulator 1) [NCBI Gene 56758] {aka Mbnl, mKIAA0428}, Tia1 (cytotoxic granule-associated RNA binding protein 1) [NCBI Gene 21841] {aka 2310050N03Rik, TIA-1, mTIA-1}, Hdac2 (histone deacetylase 2) [NCBI Gene 15182] {aka D10Wsu179e, YAF1, Yy1bp, mRPD3}, Tial1 (Tia1 cytotoxic granule-associated RNA binding protein-like 1) [NCBI Gene 21843] {aka 5330433G13Rik, TIAR, mTIAR}
- **Diseases:** carcinogenesis (MESH:D063646), cancer (MESH:D009369), sleep abnormalities (MESH:D012893), peripheral nerve tumors (MESH:D010524), Neurofibromatosis type 1 (MESH:D009456), brain tumor (MESH:D001932), anxiety (MESH:D001007), PTSD (MESH:D013313), cafe au lait spots (MESH:D019080), Glioma (MESH:D005910), cardiovascular abnormalities (MESH:D018376), Cardiac diseases (MESH:D006331), cystic fibrosis (MESH:D003550), plexiform neurofibromas (MESH:D018318), Embryonic Lethal Abnormal (MESH:D020964), depressive behaviors (MESH:D011596), ELAVL (MESH:D014786), learning and behavioral defects (MESH:D007859), spinal muscular atrophy (MESH:D009134), Lisch nodules (MESH:C567588), cognitive and behavioral difficulties (MESH:D003072), deficits in executive function, (MESH:D001289), skeletal defects (MESH:C567306), HGG (MESH:D008228)
- **Chemicals:** oxygen (MESH:D010100), cAMP (-), oligonucleotides (MESH:D009841), zinc (MESH:D015032), GTP (MESH:D006160), RAS (MESH:D011883), calcium (MESH:D002118), GDP (MESH:D006153)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606], Gallus gallus (bantam, species) [taxon 9031], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932]
- **Cell lines:** PC12 — Rattus norvegicus (Rat), Rat adrenal gland pheochromocytoma, Cancer cell line (CVCL_0481)

## Full text

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## Figures

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## References

39 references — full list in the complete paper: https://tomesphere.com/paper/PMC12352984/full.md

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Source: https://tomesphere.com/paper/PMC12352984