# Do organisms need an impact factor? Citations of key biological resources including model organisms reveal usage patterns and impact

**Authors:** Agata Piekniewska, Martijn Roelandse, Kevin C. Kent Lloyd, Ian Korf, Stephen Randal Voss, Giovanni de Castro, Diogo M. Magnani, Zoltan Varga, Christina James-Zorn, Marko Horb, Jeffery S. Grethe, Anita Bandrowski, Miriam A. Hickey, Miriam A. Hickey, Miriam A. Hickey, Miriam A. Hickey

PMC · DOI: 10.1371/journal.pone.0327344 · PLOS One · 2025-08-13

## TL;DR

This paper examines how researchers cite key biological resources and shows that using standardized identifiers improves tracking and research rigor.

## Contribution

The study demonstrates that promoting RRID usage significantly increases findable citations and improves adherence to research rigor criteria.

## Key findings

- Encouraging RRID citations led to an increase from ~50% to ~85% findable citations over several years.
- Improved citation practices at MMRRC correlated with higher Rigor and Transparency Index scores for studies using their mice.
- About 50% of resources remain non-findable, hindering reproducibility and tracking.

## Abstract

Research resources like transgenic animals and antibodies are the workhorses of biomedicine, enabling investigators to relatively easily study specific disease conditions. As key biological resources, transgenic animals and antibodies are often validated, maintained, and distributed from university-based stock centers. As these centers heavily rely on grant funding, it is critical that they are cited by investigators so that usage can be tracked. However, unlike systems for tracking the impact of papers, the conventions and systems for tracking key resource usage and impact lag. Previous studies have shown that about 50% of the resources are not findable, making the studies they support irreproducible, but also makes tracking resources difficult. The RRID (Research Resource Identifiers) project is filling this gap by working with journals and resource providers to improve citation practices and to track the usage of these key resources. Here, we reviewed 10 years of citation practices for five university based stock centers, characterizing each reference into two broad categories: findable (authors could use the RRID, stock number, or full name) and not findable (authors could use a nickname or a common name that is not unique to the resource). The data revealed that when stock centers asked their communities to cite resources by RRID, in addition to helping stock centers more easily track resource usage by increasing the number of RRID papers, authors shifted from citing resources predominantly by nickname (~50% of the time) to citing them by one of the findable categories (~85%) in a matter of several years. In the case of one stock center, the MMRRC, the improvement in findability is also associated with improvements in the adherence to NIH rigor criteria, as determined by a significant increase in the Rigor and Transparency Index for studies using MMRRC mice. From these data, it was not possible to determine whether outreach to authors or changes to stock center websites drove better citation practices, but findability of research resources and rigor adherence were improved.

## Full-text entities

- **Genes:** Pax6 (paired box 6) [NCBI Gene 18508] {aka 1500038E17Rik, AEY11, Dey, Gsfaey11, Pax-6, Sey}
- **Diseases:** ZIRC (MESH:D000082122), DSHB (MESH:C567924), PIDs (MESH:D000088562), MMRRC (MESH:D014947), AGSC (MESH:D008224), MOD (MESH:C564833)
- **Chemicals:** PONE-D-25-07468Do (-)
- **Species:** Homo sapiens (human, species) [taxon 9606], Ambystoma mexicanum (axolotl, species) [taxon 8296], Xenopus laevis (African clawed frog, species) [taxon 8355], Danio rerio (leopard danio, species) [taxon 7955], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** L286V, M146L
- **Cell lines:** AGSC — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_E031)

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12349098/full.md

## References

12 references — full list in the complete paper: https://tomesphere.com/paper/PMC12349098/full.md

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Source: https://tomesphere.com/paper/PMC12349098