# Identifying Therapeutic Targets for Amyotrophic Lateral Sclerosis Through Modeling of Multi-Omics Data

**Authors:** François Xavier Blaudin de Thé, Cornelius J. H. M. Klemann, Ward De Witte, Joanna Widomska, Philippe Delagrange, Clotilde Mannoury La Cour, Mélanie Fouesnard, Sahar Elouej, Keith Mayl, Nicolas Lévy, Johannes Krupp, Ross Jeggo, Philippe Moingeon, Geert Poelmans

PMC · DOI: 10.3390/ijms26157087 · International Journal of Molecular Sciences · 2025-07-23

## TL;DR

This study uses multi-omics data modeling to identify and validate new therapeutic targets for ALS, a neurodegenerative disease.

## Contribution

The novel contribution is the orthogonal combination of two complementary modeling approaches to prioritize disease-relevant therapeutic targets in ALS.

## Key findings

- 10 existing therapeutic targets for ALS showed high scores in both modeling approaches, indicating their relevance.
- The study identified MATR3 as a novel putative drug target with strong genetic and functional links to ALS.
- The combination of modeling approaches enhances understanding of ALS pathogenesis and aids in target discovery.

## Abstract

Amyotrophic lateral sclerosis (ALS) is a progressive neurodegenerative disease that primarily affects motor neurons, leading to loss of muscle control, and, ultimately, respiratory failure and death. Despite some advances in recent years, the underlying genetic and molecular mechanisms of ALS remain largely elusive. In this respect, a better understanding of these mechanisms is needed to identify new and biologically relevant therapeutic targets that could be developed into treatments that are truly disease-modifying, in that they address the underlying causes rather than the symptoms of ALS. In this study, we used two approaches to model multi-omics data in order to map and elucidate the genetic and molecular mechanisms involved in ALS, i.e., the molecular landscape building approach and the Patrimony platform. These two methods are complementary because they rely upon different omics data sets, analytic methods, and scoring systems to identify and rank therapeutic target candidates. The orthogonal combination of the two modeling approaches led to significant convergences, as well as some complementarity, both for validating existing therapeutic targets and identifying novel targets. As for validating existing targets, we found that, out of 217 different targets that have been or are being investigated for drug development, 10 have high scores in both the landscape and Patrimony models, suggesting that they are highly relevant for ALS. Moreover, through both models, we identified or corroborated novel putative drug targets for ALS. A notable example of such a target is MATR3, a protein that has strong genetic, molecular, and functional links with ALS pathology. In conclusion, by using two distinct and highly complementary disease modeling approaches, this study enhances our understanding of ALS pathogenesis and provides a framework for prioritizing new therapeutic targets. Moreover, our findings underscore the potential of leveraging multi-omics analyses to improve target discovery and accelerate the development of effective treatments for ALS, and potentially other related complex human diseases.

## Linked entities

- **Proteins:** MATR3 (matrin 3)
- **Diseases:** Amyotrophic lateral sclerosis (MONDO:0004976), ALS (MONDO:0004976)

## Full-text entities

- **Genes:** MATR3 (matrin 3) [NCBI Gene 9782] {aka ALS21, MPD2, VCPDM}
- **Diseases:** neurodegenerative disease (MESH:D019636), respiratory failure (MESH:D012131), ALS (MESH:D000690), death (MESH:D003643), loss (MESH:D016388), muscle control (MESH:C536209)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12346086/full.md

## References

44 references — full list in the complete paper: https://tomesphere.com/paper/PMC12346086/full.md

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Source: https://tomesphere.com/paper/PMC12346086