# Orthrus: a Pumilio-family gene involved in fruiting body and dark stipe development in Coprinopsis cinerea

**Authors:** Benedek Szathmári, Balázs Bálint, Botond Hegedüs, Máté Virágh, Zhihao Hou, Xiao-Bin Liu, Hongli Wu, Csenge Földi, Julien Gagneur, Johann Promeuschel, Árpád Csernetics, László G. Nagy

PMC · DOI: 10.3389/ffunb.2025.1633301 · 2025-07-30

## TL;DR

This paper identifies a gene, ort2, in fungi that plays a role in the development of dark stipes, a light-dependent feature of mushroom fruiting bodies.

## Contribution

The study discovers a novel conserved RNA-binding protein, ort2, involved in fruiting body development in fungi.

## Key findings

- Disrupting ort2 in Coprinopsis cinerea leads to a deficiency in dark stipe formation.
- Overexpression of ort2 results in significantly more dark stipes and rare branching fruiting body phenotypes.
- Phylogenetic analysis shows high conservation of ort2 subfamilies within Agaricomycetes fungi.

## Abstract

Fruiting bodies of mushroom-forming fungi (Agaricomycetes) are complex multicellular structures whose formation is regulated by a developmental program that dynamically responds to environmental changes, such as light intensity. However, the genetic architecture and regulation of this developmental program are poorly known. Here, we characterize a novel Pumilio family gene, ort2, which influences fruiting body development, particularly the formation of dark stipes, a light-dependent alternative developmental trajectory. Phylogenetic analysis of this RNA-binding protein family in fungi revealed a distinct subfamily structure, with high conservation of each subfamily within Agaricomycetes. Reverse genetics experiments in the model species Coprinopsis cinerea revealed that ort2 disruptants produced fruiting bodies, but were deficient in dark stipe formation, whereas the overexpression mutants produced significantly more dark stipes. The gene was named after Orthrus, the two-headed dog of classical mythology, based on rare but reproducible branching fruiting body phenotypes observed upon overexpression. Our findings reveal fruiting-related functions for ort2, a novel conserved RNA-binding protein, and may serve as a novel entry point for understanding the molecular basis of dark stipe development.

## Linked entities

- **Genes:** ORT2 (uncharacterized protein) [NCBI Gene 4838167]
- **Species:** Coprinopsis cinerea (taxon 5346), Agaricomycetes (taxon 155619)

## Full-text entities

- **Genes:** PUF3 (mRNA-binding protein PUF3) [NCBI Gene 850647]
- **Diseases:** CF (MESH:D003550), X-BL (MESH:D002051), developmental abnormalities (MESH:D006130), blind (MESH:D001766), fungal (MESH:D009181)
- **Chemicals:** water (MESH:D014867), glucose (MESH:D005947), PABA (MESH:D010129), agar (MESH:D000362), Cr (MESH:D002857), SYBR Green (MESH:C098022), CaCl2 (MESH:D002122), MMC (-), nitrogen (MESH:D009584), CO2 (MESH:D002245)
- **Species:** Flammulina velutipes (species) [taxon 38945], Coprinopsis cinerea (species) [taxon 5346], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Cryptococcus neoformans (Cryptococcus neoformans serotype A, species) [taxon 5207], Mycena galericulata (species) [taxon 71905], Hymenopellis radicata (rooting shank, species) [taxon 937743], Saccharomycotina (budding yeasts & allies, subphylum) [taxon 147537], Schizophyllum commune (species) [taxon 5334], Neurospora crassa (species) [taxon 5141], Lentinula edodes (shiitake mushroom, species) [taxon 5353], Pleurotus eryngii (species) [taxon 5323], Agaricus bisporus (common mushroom, species) [taxon 5341], Mycosarcoma maydis (corn smut, species) [taxon 5270], Canis lupus familiaris (dog, subspecies) [taxon 9615], Schizosaccharomyces pombe (fission yeast, species) [taxon 4896], Pleurotus ostreatus (oyster mushroom, species) [taxon 5322], Cryptococcus deneoformans (Cryptococcus neoformans serotype D, species) [taxon 40410], Salivirus CH (no rank) [taxon 1330996], Flammulina (genus) [taxon 38944]
- **Cell lines:** NEB5alpha — Mus musculus (Mouse), Hybridoma (CVCL_B5J7), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232)

## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12344735/full.md

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Source: https://tomesphere.com/paper/PMC12344735