# Case Report: Anaerococcus vaginalis spondylodiscitis diagnosed and cured based on nanopore targeted sequencing

**Authors:** Bing Zhou, Youfeng Guo, Beiduo Shen, Ziqi Zhu, Bin Yu, Gen Li, Ming Zong, Tao Hu, Desheng Wu

PMC · DOI: 10.3389/fmed.2025.1645609 · 2025-07-30

## TL;DR

A patient with severe back pain was diagnosed with a rare infection using nanopore sequencing and successfully treated with antibiotics.

## Contribution

First reported case of Anaerococcus vaginalis spondylodiscitis diagnosed via nanopore targeted sequencing.

## Key findings

- Nanopore targeted sequencing identified Anaerococcus vaginalis in a patient with negative culture results.
- Appropriate antibiotic treatment led to a favorable clinical outcome for the patient.
- The case highlights the utility of nanopore sequencing in diagnosing rare infections.

## Abstract

Spondylodiscitis caused by Anaerococcus vaginalis has not been reported yet, making it worthy of further exploration. We closely monitored a patient who experienced worsened low back pain for 1 month and was unable to walk due to severe pain for 1 week. Through thorough examinations, the patient was diagnosed with lumbar disc herniation and a suspected case of spondylodiscitis, necessitating posterior lumbar surgery. All culture results returned negative. However, nanopore targeted sequencing (NTS) identified the presence of Anaerococcus vaginalis. Subsequent administration of appropriate antibiotics resulted in a favorable clinical outcome for the patient.

## Linked entities

- **Species:** Anaerococcus vaginalis (taxon 33037)

## Full-text entities

- **Genes:** CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, UROD (uroporphyrinogen decarboxylase) [NCBI Gene 7389] {aka PCT, UPD}, NEURL1 (neuralized E3 ubiquitin protein ligase 1) [NCBI Gene 9148] {aka NEUR1, NEURL, RNF67, bA416N2.1, neu, neu-1}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, HEBP1 (heme binding protein 1) [NCBI Gene 50865] {aka HBP, HEBP}
- **Diseases:** infection (MESH:D007239), spine (MESH:D016135), lung infections (MESH:D012141), fungal (MESH:D009181), low back pain (MESH:D017116), lumbar pain (MESH:D010146), necrosis (MESH:D009336), Spondylodiscitis (MESH:D015299), restricted (MESH:D002313), tenderness (MESH:D063806), NTS (MESH:D010855), intervertebral disc infection (MESH:C535531), degenerative (MESH:D019636), scoliosis (MESH:D012600), infectious diseases (MESH:D003141), inflammation (MESH:D007249)
- **Chemicals:** celecoxib (MESH:D000068579), Levofloxacin (MESH:D064704), Metronidazole (MESH:D008795), hematoxylin (MESH:D006416), Vancomycin (MESH:D014640), eosin (MESH:D004801)
- **Species:** Streptococcus oralis subsp. tigurinus (subspecies) [taxon 1077464], Veillonella parvula (species) [taxon 29466], Rothia dentocariosa (species) [taxon 2047], Anaerococcus vaginalis (species) [taxon 33037], Enterococcus faecalis (species) [taxon 1351], Homo sapiens (human, species) [taxon 9606], Prescottella equi (species) [taxon 43767], Parvimonas micra (species) [taxon 33033], Aerococcus urinae (species) [taxon 1376]

## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12343570/full.md

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Source: https://tomesphere.com/paper/PMC12343570