# pH-Controlled isomerization kinetics of ortho-disubstituted benzamidines: E/Z isomerism and axial chirality

**Authors:** Ryota Kimura, Satoshi Ichikawa, Akira Katsuyama

PMC · DOI: 10.3762/bjoc.21.120 · Beilstein Journal of Organic Chemistry · 2025-08-04

## TL;DR

This paper explores how pH can control the structural changes in a new type of molecular switch based on benzamidine.

## Contribution

The study introduces ortho-disubstituted benzamidine as a novel pH-responsive molecular switch.

## Key findings

- Protonation of the amidine moiety suppresses C–N bond rotation.
- pH adjustment can control isomerization kinetics via rotational barriers.
- ortho-Disubstituted benzamidine shows potential as a pH-responsive system.

## Abstract

pH-Responsive molecular switches and motors are a class of organic molecules whose three-dimensional structure can be changed by acid–base stimuli. To date, pH-responsive molecular switches have been developed using various functional groups, but further advances require expanding the range of pH-responsive systems and discovering new molecular architectures. Here, we investigate the pH-responsive behavior of ortho-disubstituted benzamidine, which generates atropisomers and E/Z isomers. The amidine moiety allows modulation of the C–N and C–N/C–C rotational barriers by protonation, providing a novel approach to control the kinetics of isomerization via pH adjustment. The results showed that protonation of the amidine moiety significantly suppresses both C–N bond rotation and C–N/C–C concerted rotation, demonstrating the potential of ortho-disubstituted benzamidine derivatives as a novel pH-responsive molecular switch.

## Linked entities

- **Chemicals:** benzamidine (PubChem CID 2332)

## Full-text entities

- **Chemicals:** disubstituted benzamidine (-), amidine (MESH:D000578)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12337994/full.md

## References

28 references — full list in the complete paper: https://tomesphere.com/paper/PMC12337994/full.md

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Source: https://tomesphere.com/paper/PMC12337994