# SPAT inhibits LUAD metastasis by targeting SF1-mediated splicing

**Authors:** Yun Ma, Xiaoxu Zhou, Mengqian Yu, Xiang Cheng, Juze Yang, Jiayi Ren, Chengcai Zheng, Jia Li, Xinyi Qian, Jiani Yi, Honghe Zhang, Yan Lu, Pengyuan Liu

PMC · DOI: 10.1038/s41419-025-07924-2 · Cell Death & Disease · 2025-08-08

## TL;DR

A new long non-coding RNA called SPAT helps prevent lung cancer spread by altering how a gene called KITLG is processed.

## Contribution

SPAT is a novel tumor suppressor lncRNA that inhibits LUAD metastasis by modulating SF1-mediated splicing of KITLG.

## Key findings

- SPAT is downregulated in LUAD and correlates with better patient outcomes.
- SPAT inhibits LUAD cell migration by disrupting SF1-mediated splicing of KITLG exon 6.
- Altered KITLG splicing reduces ERK phosphorylation and metastatic potential.

## Abstract

Lung adenocarcinoma (LUAD) progression involves alterations in oncogenes and tumor suppressor genes, collectively shaping tumorigenic landscape. However, the precise interactions within this landscape remain inadequately understood. Here, we present a functional characterization of a novel long non-coding RNA (lncRNA), SPAT (splice associated transcript). SPAT is downregulated in LUAD and its expression positively correlates with favorable prognosis. In vitro and in vivo experiments demonstrated that SPAT inhibits the migration of LUAD cells. This inhibitory effect is mediated by SPAT’s interaction with splicing factor 1 (SF1), which disrupts SF1-mediated splicing of KITLG/SCF exon 6, thereby suppressing ERK phosphorylation. Our findings suggest that SPAT acts as a tumor suppressor in LUAD by regulating alternative splicing and highlight its potential as a therapeutic target for managing LUAD metastasis.

SPAT suppresses LUAD cell migration by binding to splicing factor 1 (SF1) and disrupting SF1-mediated inclusion of exon 6 in the KITLG/SCF transcript. This shifts KITLG splicing toward increased production of KITLG-201 isoform and reduced KITLG-205, ultimately lowering ERK phosphorylation and limiting metastatic potential.

SPAT suppresses LUAD cell migration by binding to splicing factor 1 (SF1) and disrupting SF1-mediated inclusion of exon 6 in the KITLG/SCF transcript. This shifts KITLG splicing toward increased production of KITLG-201 isoform and reduced KITLG-205, ultimately lowering ERK phosphorylation and limiting metastatic potential.

## Linked entities

- **Genes:** AGXT (alanine--glyoxylate aminotransferase) [NCBI Gene 189], KITLG (KIT ligand) [NCBI Gene 4254], SF1 (splicing factor 1) [NCBI Gene 7536]
- **Proteins:** EPHB2 (EPH receptor B2)
- **Diseases:** lung adenocarcinoma (MONDO:0005061)

## Full-text entities

- **Genes:** KITLG (KIT ligand) [NCBI Gene 4254] {aka DCUA, DFNA69, FPH2, FPHH, KL-1, Kitl}, SF1 (splicing factor 1) [NCBI Gene 7536] {aka BBP, D11S636, MBBP, ZCCHC25, ZFM1, ZNF162}, MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}
- **Diseases:** tumorigenic (MESH:D002471), tumor (MESH:D009369), LUAD (MESH:D000077192)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12334704/full.md

## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12334704/full.md

## References

6 references — full list in the complete paper: https://tomesphere.com/paper/PMC12334704/full.md

---
Source: https://tomesphere.com/paper/PMC12334704