# Rag GTPases control lysosomal acidification by regulating v-ATPase assembly in Drosophila

**Authors:** Ying Zhou, Xiaodie Yang, Wenyu Xu, Sulin Shen, Weikang Fan, Guoqiang Meng, Yang Cheng, Yingying Lu, Youheng Wei

PMC · DOI: 10.1016/j.jbc.2025.110400 · The Journal of Biological Chemistry · 2025-06-19

## TL;DR

This paper shows how Rag GTPases regulate lysosomal acidification by controlling v-ATPase assembly in fruit flies.

## Contribution

The study reveals a novel mechanism where Rag GTPases interact with the CCT complex to regulate v-ATPase assembly and lysosomal function.

## Key findings

- GDP-bound RagA promotes v-ATPase assembly by breaking the interaction with the CCT complex.
- Knockdown of CCT components rescues autolysosome accumulation in RagA RNAi.
- Lysosomal localization of Rag GTPases is essential for regulating acidification via LAMTOR.

## Abstract

The Rag GTPases play an important role in sensing amino acids and activating the target of rapamycin complex 1, a master regulator of cell metabolism. Previously, we have shown that GDP-bound RagA stimulates lysosome acidification and autophagic degradation, which are essential for young egg chamber survival under starvation in Drosophila. However, the underlying mechanism is unclear. Here, we demonstrate that the GDP-bound RagA breaks the physical interaction between cytosolic chaperonin–containing tailless complex polypeptide 1 (CCT) and vacuolar H+-ATPase (v-ATPase) subunit V1, and thus promotes the assembly of active v-ATPase and increases the lysosomal acidification. Consistently, knockdown of CCT complex components rescued the accumulation of defective autolysosomes in RagA RNAi. Moreover, the knockdown of Lamtor4, a component of lysosomal adaptor and MAPK and mTOR activator (LAMTOR) that anchors Rag GTPases to the lysosome, resulted in autolysosome accumulation, suggesting that Rag GTPases regulate lysosomal acidification depend on their lysosomal localization. Knockdown of the CCT complex components attenuated the autophagic defects in Lamtor 4 RNAi. Our work highlights the interaction between CCT and v-ATPase in regulating lysosomal acidification.

## Linked entities

- **Genes:** RRAGA (Ras related GTP binding A) [NCBI Gene 10670], FLVCR2 (FLVCR choline and putative heme transporter 2) [NCBI Gene 55640], IGKV1-5 (immunoglobulin kappa variable 1-5) [NCBI Gene 28299], LAMTOR4 (late endosomal/lysosomal adaptor, MAPK and MTOR activator 4) [NCBI Gene 389541]
- **Proteins:** VhaSFD (Vacuolar H[+]-ATPase SFD subunit), FLVCR2 (FLVCR choline and putative heme transporter 2)
- **Species:** Drosophila (taxon 7215)

## Full-text entities

- **Genes:** Mgtor (Megator) [NCBI Gene 36264] {aka Bx34, CG8274, Dmel\CG8274, MTOR, Mtor, TPR}, rl (rolled) [NCBI Gene 3354888] {aka 12559, BcDNA:RE08694, CG12559, CG18732, CT34260, CT39192}, RagA-B (Ras-related GTP binding A/B) [NCBI Gene 41071] {aka CG11968, Dmel\CG11968, Gtr1, Rag, Rag A, Rag A-B}, beat-Ia (beaten path Ia) [NCBI Gene 34947] {aka BG:DS00913.3, Beat Ia, CCT, CG4846, CT15567, Cct}
- **Chemicals:** GDP (MESH:D006153), amino acids (MESH:D000596)
- **Species:** Drosophila melanogaster (fruit fly, species) [taxon 7227]

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12332402/full.md

## References

43 references — full list in the complete paper: https://tomesphere.com/paper/PMC12332402/full.md

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Source: https://tomesphere.com/paper/PMC12332402