# RNA-mediated inhibition of mitochondrial SHMT2 impairs cancer cell proliferation

**Authors:** Francesca Romana Liberati, Sharon Spizzichino, Sara Di Russo, Giulia Elizabeth Borsatti, Agnese Riva, Maria Chiara Magnifico, Amani Bouzidi, Giorgio Giardina, Marzia Arese, Chiara Scribani Rossi, Dalila Boi, Giovanna Boumis, Federica Di Fonzo, Giulia Guarguaglini, Roberto Contestabile, Angela Tramonti, Alberto Macone, Alessandro Paiardini, Serena Rinaldo, Alessio Paone, Francesca Cutruzzolà

PMC · DOI: 10.1038/s41420-025-02646-y · 2025-08-06

## TL;DR

This study shows that RNA can be used to inhibit a key cancer-related enzyme in mitochondria, reducing cancer cell growth in lab and animal models.

## Contribution

The paper introduces an RNA-based method to selectively inhibit SHMT2, a mitochondrial enzyme with no existing selective inhibitor.

## Key findings

- RNA inhibited SHMT2's activity in vitro with an IC50 of 4.4 ± 0.2 nM.
- Mitochondrial delivery of the RNA reduced lung cancer cell viability and tumor growth in mice.
- RNA-based strategies may target other RNA-binding metabolic enzymes where traditional inhibitors fail.

## Abstract

Targeting metabolic reprogramming is crucial for cancer treatment. Recent advances highlight RNA’s ability to directly regulate enzyme activity through riboregulation. In this study, we used an RNA-based approach to inhibit the mitochondrial enzyme Serine hydroxymethyltransferase 2 (SHMT2), which lacks a selective in vivo inhibitor. SHMT2, often overexpressed in various cancers, is pivotal in one-carbon metabolism, a pathway vital for cell proliferation. Our results show that RNA effectively inhibits SHMT2’s serine-to-glycine conversion in vitro (IC50 = 4.4 ± 0.2 nM). By using a mitochondrial import signal, we successfully delivered the inhibitory RNA into the mitochondria of lung cancer cells, reducing cell viability in vitro and tumor growth in vivo in a xenograft mouse model. These findings suggest that RNA-based strategies could be extended to selectively target other RNA-binding metabolic enzymes, offering potential solutions where small molecule inhibitors fall short or to counteract drug resistance.

## Linked entities

- **Proteins:** SHMT2 (serine hydroxymethyltransferase 2), SHM2 (serine hydroxymethyltransferase 2)
- **Diseases:** cancer (MONDO:0004992), lung cancer (MONDO:0005138)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Shmt2 (serine hydroxymethyltransferase 2 (mitochondrial)) [NCBI Gene 108037] {aka 2700043D08Rik, SHMT}
- **Diseases:** lung cancer (MESH:D008175), cancer (MESH:D009369)
- **Chemicals:** one-carbon (-)
- **Species:** Mus musculus (house mouse, species) [taxon 10090]

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12328718/full.md

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Source: https://tomesphere.com/paper/PMC12328718