# The role of IP3 receptors and SERCA pumps in restoring working memory under amyloid β induced Alzheimer's disease: a modeling study

**Authors:** Ziyi Huang, Lei Wang

PMC · DOI: 10.3389/fncom.2025.1643547 · Frontiers in Computational Neuroscience · 2025-07-22

## TL;DR

This study uses a computational model to explore how calcium regulation affects working memory in Alzheimer's disease and identifies potential therapeutic targets.

## Contribution

The study introduces a spiking network model to investigate how IP3 receptors and SERCA pumps influence memory in Alzheimer's disease.

## Key findings

- Normal conditions allow ~90% memory storage in working memory networks.
- Amyloid beta reduces memory storage to 54%-58%, consistent with experimental findings.
- Modulating IP3 and SERCA activities can restore memory performance to up to 81%.

## Abstract

Memory impairment is a prevalent symptom in patients with Alzheimer's disease (AD), with working memory loss being the most prominent deficit. Recent experimental evidence suggests that abnormal calcium levels in the Endoplasmic Reticulum (ER) may disrupt synaptic transmission, leading to memory loss in AD patients. However, the specific mechanisms by which intracellular calcium homeostasis influences memory formation, storage, and recall in the context of AD remain unclear. In this study, we investigate the effects of intracellular calcium homeostasis on AD-related working memory (WM) using a spiking network model. We quantify memory storage by measuring the similarity between images during the training and testing phases. The model results indicate that ~90% of memory can be stored in the WM network under normal conditions. In contrast, the presence of amyloid beta (Aβ), associated with AD, significantly reduces this similarity, allowing only 54%-58% of memory to be stored, this alteration trend is consistent with previous experimental findings. Further analysis reveals that downregulating the activation of inositol triphosphate (IP3) receptors and upregulating the activation of the sarco-endoplasmic reticulum Ca2+ ATPase (SERCA) pumps can enhance memory performance, achieving about 78% and 77%, respectively. Moreover, simultaneously manipulating both IP3 and SERCA activations can increase memory capacity to around 81%. These findings suggest several potential therapeutic targets for addressing memory impairment in Aβ aggregation induced AD patients. Additionally, our network model could serve as a foundation for exploring further mechanisms that modulate memory dysfunction at the genetic, cellular, and network levels.

## Linked entities

- **Proteins:** ip3 (LAGLIDADG type homing endonuclease), SERCA (Sarco/endoplasmic reticulum Ca(2+)-ATPase)
- **Diseases:** Alzheimer's disease (MONDO:0004975)

## Full-text entities

- **Genes:** Grm5 (glutamate receptor, metabotropic 5) [NCBI Gene 108071] {aka 6430542K11Rik, Glu5R, Gprc1e, mGluR5, mGluR5b}, MAPT (microtubule associated protein tau) [NCBI Gene 4137] {aka DDPAC, FTD1, FTDP-17, MAPTL, MSTD, MTBT1}, RYR2 (ryanodine receptor 2) [NCBI Gene 6262] {aka ARVC2, ARVD2, RYR-2, RyR, VACRDS, VTSIP}, ATP2A3 (ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3) [NCBI Gene 489] {aka SERCA3}, App (amyloid beta precursor protein) [NCBI Gene 11820] {aka Abeta, Abpp, Adap, Ag, Cvap, E030013M08Rik}, APP (amyloid beta precursor protein) [NCBI Gene 351] {aka AAA, ABETA, ABPP, AD1, APPI, CTFgamma}, Atp2a2 (ATPase, Ca++ transporting, cardiac muscle, slow twitch 2) [NCBI Gene 11938] {aka 9530097L16Rik, D5Wsu150e, SERCA2, SERCA2B, Serca2a, mKIAA4195}
- **Diseases:** AD (MESH:D000544), amnesia (MESH:D000647), cardiac disease (MESH:D006331), dementia (MESH:D003704), depression (MESH:D003866), cognitive deficits (MESH:D003072), excitotoxic injury (MESH:D014947), mitochondrial dysfunction (MESH:D028361), neurodegenerations (MESH:D019636), Toxicity (MESH:D064420), sleep disturbances (MESH:D012893), WM damage (MESH:D000073397), Memory impairments (MESH:D008569), neuronal damage (MESH:D009410)
- **Chemicals:** ACh (MESH:D000109), IP3 (MESH:D015544), Calcium (MESH:D002118), 1-[3H] glutamate (-), glutamates (MESH:D005971), MPEP (MESH:C121465), Na (MESH:D012964), Glutamate (MESH:D018698), fenobam (MESH:C032794)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Rattus norvegicus (brown rat, species) [taxon 10116], Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

16 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12321881/full.md

## References

42 references — full list in the complete paper: https://tomesphere.com/paper/PMC12321881/full.md

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Source: https://tomesphere.com/paper/PMC12321881