# VapC toxins promote the pathogenesis of Rickettsia heilongjiangensis by cleaving essential RNAs from both Rickettsia and its host

**Authors:** Yan Liu, Weiting Zhou, Jiaying Zhao, Qingyin Shi, Yu Xin, Xuan Ouyang, Yonghui Yu, Jun Jiao, Maozhang He, Yajun Song, Kehan Xu, Matthew Wolfgang, Matthew Wolfgang

PMC · DOI: 10.1371/journal.ppat.1013380 · PLOS Pathogens · 2025-07-30

## TL;DR

This study reveals how Rickettsia bacteria use toxin-antitoxin systems to survive and cause disease in their host by manipulating RNA and evading oxidative stress.

## Contribution

This is the first study to elucidate the function of toxin-antitoxin modules in an obligatory intracellular bacterium.

## Key findings

- The vapBC1 module induces bacterial dormancy by cleaving tRNAfMet in response to host reactive oxidative species.
- The vapBC2 module contributes to virulence by degrading host ribosomal RNAs.
- Disrupting VapC toxins could be a viable anti-infection therapy for host-associated bacteria.

## Abstract

Toxin-antitoxin (TA) modules enable bacteria to persist under stressful environments. However, they are typically absent from host-associated prokaryotes due to their potential host toxicity. Here, the obligate intracellular bacterium spotted fever group (SFG) rickettsiae, which causes mild to severe human illness, was shown to harbor two vapBC TA modules. One of the vapBC modules (vapBC1) is crucial for Rickettsia to withstand accumulated host reactive oxidative species (ROS), via induction of bacterial dormancy through cleavage on the anti-codon loop of tRNAfMet, thereby facilitating intracellular survival and infection in a mouse model. Another vapBC module (vapBC2) was found to be activated and toxin exposed to host cytoplasm, contributing to Rickettsia’s virulence and adaptability in its human host by non-specifically degrading host rRNAs rather than regulating rickettsial growth. Recognition of these rickettsial effectors contributes to understanding the intracellular adaptability and pathogenicity of all host-associated pathogens that harbor TA modules.

Vascular endothelial cells employ ROS as a common and efficient defense against pathogen infections. However, little is known about how those obligatory intracellular bacteria combat the oxidative attack that develops inside their host. Here, we demonstrated how the obligate intracellular bacterium Rickettsia’s vapBC1 TA module induces bacterial persisters in response to their host ROS threat, promoting rickettsial survival and, eventually, making infection establishment in mice easier. Notably, unspecific degradation of host ribosomal RNAs by free VapC toxin exposed to the host cytosol may alter host metabolism and promote bacterial survival. To the best of our knowledge, this is the first study to elucidate TA function in an obligatory intracellular bacterium. Moreover, for all host-associated bacteria that possess vapBC TA modules, disrupting the impact of VapC toxins may be a viable anti-infection therapy.

## Linked entities

- **Proteins:** vapC (ribonuclease VapC)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** CST12P (cystatin 12, pseudogene) [NCBI Gene 106478911] {aka Cst, Ctes4, E2}, GSR (glutathione-disulfide reductase) [NCBI Gene 2936] {aka CNSHA10, GR, GSRD, HEL-75, HEL-S-122m}, TRNG (tRNA-Gly) [NCBI Gene 4563] {aka MTTG}, TJAP1 (tight junction associated protein 1) [NCBI Gene 93643] {aka PILT, TJP4}, SOD1 (superoxide dismutase 1) [NCBI Gene 6647] {aka ALS, ALS1, HEL-S-44, IPOA, SOD, STAHP}, CAT (catalase) [NCBI Gene 847], EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, IFNAR1 (interferon alpha and beta receptor subunit 1) [NCBI Gene 3454] {aka AVP, CRF2-1, IFN-R-1, IFN-alpha-REC, IFNAR, IFNBR}, GPX1 (glutathione peroxidase 1) [NCBI Gene 2876] {aka GPXD, GSHPX1}, LONP1 (lon peptidase 1, mitochondrial) [NCBI Gene 9361] {aka CODASS, LON, LONP, LonHS, PIM1, PRSS15}, SOD2 (superoxide dismutase 2) [NCBI Gene 6648] {aka GC1, GClnc1, IPO-B, IPOB, MNSOD, MVCD6}, KEAP1 (kelch like ECH associated protein 1) [NCBI Gene 9817] {aka INrf2, KLHL19}, MYCN (MYCN proto-oncogene, bHLH transcription factor) [NCBI Gene 4613] {aka FGLDS1, MODED, MPAPA, MYCNsORF, MYCNsPEP, N-myc}, Ifnar1 (interferon (alpha and beta) receptor 1) [NCBI Gene 15975] {aka Ifar, Ifnar, Ifrc, Infar}, Lonp1 (lon peptidase 1, mitochondrial) [NCBI Gene 74142] {aka 1200017E13Rik, LON, Prss15}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, CALML3 (calmodulin like 3) [NCBI Gene 810] {aka CLP}, VIPR1 (vasoactive intestinal peptide receptor 1) [NCBI Gene 7433] {aka HVR1, II, PACAP-R-2, PACAP-R2, RDC1, V1RG}, VAPB (VAMP associated protein B and C) [NCBI Gene 9217] {aka ALS8, VAMP-B, VAP-B}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, GSK3B (glycogen synthase kinase 3 beta) [NCBI Gene 2932]
- **Diseases:** Rickettsial vasculitis (MESH:D012282), fever (MESH:D005334), vascular diseases (MESH:D014652), cytotoxicity (MESH:D064420), FESF (MESH:D000073605), organ failure (MESH:D009102), infection (MESH:D007239), RMSF (MESH:D012373), death (MESH:D003643), MSF (MESH:D001907), Rh-B8 (MESH:D013180)
- **Chemicals:** OH (MESH:C031356), EDTA (MESH:D004492), Coomassie blue (MESH:C048139), NaCl (MESH:D012965), ATP (MESH:D000255), glucose (MESH:D005947), digoxin (MESH:D004077), 2',7'-dichlorofluorescein (MESH:C037631), polyacrylamide (MESH:C016679), water (MESH:D014867), Tween 20 (MESH:D011136), HEPES (MESH:D006531), ethidium bromide (MESH:D004996), EB (MESH:C478160), acrylamide (MESH:D020106), ice (MESH:D007053), Chl (MESH:D002701), H2O2 (MESH:D006861), O2- (MESH:D013481), digoxigenin (MESH:D004076), puromycin (MESH:D011691), NaNO2 (MESH:D012977), TCA (MESH:D014238), HCl (MESH:D006851), 2',7'-Dichlorodihydrofluorescein (MESH:C065013), imidazole (MESH:C029899), HMEC (-), amino acids (MESH:D000596), L-glutamine (MESH:D005973), ethanol (MESH:D000431), glycerol (MESH:D005990), ROS (MESH:D017382), SDS (MESH:D012967), glutamic acid (MESH:D018698), DCFH-DA (MESH:C029569), phenol (MESH:D019800), NO2 (MESH:D009585), Agarose (MESH:D012685), lipids (MESH:D008055), MgCl2 (MESH:D015636), hydroxyl radical (MESH:D017665), PVDF (MESH:C024865), phosphate (MESH:D010710), DTT (MESH:D004229), hydrocortisone (MESH:D006854), DTNB (MESH:D004228), KCl (MESH:D011189), urea (MESH:D014508), CCK-8 (MESH:D012844), Lipofectamine 2000 (MESH:C086724), GSSG (MESH:D019803), borate (MESH:D001881), sucrose (MESH:D013395), GSH (MESH:D005978), 3H (MESH:D014316), uridine (MESH:D014529), nucleotide (MESH:D009711), chloroform (MESH:D002725), peroxides (MESH:D010545), L-arabinose (MESH:D001089)
- **Species:** Rickettsia conorii (species) [taxon 781], Mycobacterium tuberculosis (species) [taxon 1773], Caulobacter vibrioides (species) [taxon 155892], Neisseria gonorrhoeae (species) [taxon 485], Escherichia coli K-12 (strain) [taxon 83333], Shigella flexneri (species) [taxon 623], Salmonella (genus) [taxon 590], Homo sapiens (human, species) [taxon 9606], Escherichia coli BL21 (strain) [taxon 511693], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Rickettsia conorii subsp. heilongjiangensis (subspecies) [taxon 226665], Rickettsia rickettsii (species) [taxon 783], Mus musculus (house mouse, species) [taxon 10090], Haemophilus influenzae (species) [taxon 727], Escherichia coli (E. coli, species) [taxon 562]
- **Mutations:** methionine at 37 , Ser/Thr, K227Q
- **Cell lines:** HEK293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), HMEC-1 — Homo sapiens (Human), Transformed cell line (CVCL_0307), E. coli K-12 — Mus musculus (Mouse), Hybridoma (CVCL_C5CR), Rh-B8 — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_2234), C57BL/6J — Mus musculus (Mouse), Transformed cell line (CVCL_C0MW), Rh- — Homo sapiens (Human), Ewing sarcoma, Cancer cell line (CVCL_1658), -6p-1 — Mus musculus (Mouse), Hybridoma (CVCL_B0UX), HEK293 — Homo sapiens (Human), Transformed cell line (CVCL_0045), Vero — Chlorocebus sabaeus (Green monkey), Spontaneously immortalized cell line (CVCL_0059), African green monkey kidney epithelial — Chlorocebus aethiops (Green monkey), Embryonic stem cell (CVCL_RY74), BL21 — Homo sapiens (Human), EBV-related Burkitt lymphoma, Cancer cell line (CVCL_M639)

## Full text

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## Figures

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## References

53 references — full list in the complete paper: https://tomesphere.com/paper/PMC12321070/full.md

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Source: https://tomesphere.com/paper/PMC12321070