# Targeted therapy combinations with ipatasertib in multi-cell type 3D tumor spheroid models

**Authors:** Beverly A. Teicher, Naoko Takebe, Thomas S. Dexheimer, Thomas E. Silvers, Nathan P. Coussens, Melinda G. Hollingshead, James H. Doroshow

PMC · DOI: 10.20935/acadonco7726 · Academia oncology · 2025-08-04

## TL;DR

This study explores how combining ipatasertib with other cancer drugs affects tumor growth in 3D models that mimic real tumors.

## Contribution

The study introduces a novel 3D multi-cell tumor spheroid model to test drug combinations involving ipatasertib.

## Key findings

- Combining ipatasertib with MEK or ERK inhibitors showed strong anti-cancer effects in half of the tested cell lines.
- Ipatasertib combined with BRAF or KRAS inhibitors was effective in cell lines with specific mutations.
- Results from 3D spheroids correlated with patient-derived xenograft responses in some cases.

## Abstract

We investigated the growth-inhibitory activity of the pan-AKT inhibitor ipatasertib in combination with other targeted therapies. Thirty-nine patient-derived cancer cell lines from the NCI Patient-Derived Models Repository and nine NCI-60 tumor cell lines were grown as mct-spheroids. The mct-spheroids, a mixture of tumor cells (60%), endothelial cells (25%), and mesenchymal stem cells (15%), were established for 3 days before compounds(s) were added. All agents were tested at concentrations up to the reported clinical Cmax values or a high concentration of 10 μM. Cell viability was assayed using CellTiter-Glo 3D after 7 days of exposure. Ipatasertib was selective for tumor cells harboring activating PI3K/AKT/mTOR pathway mutations. Dual inhibition of the PI3K/AKT/mTOR and RAS/MEK/ERK pathways was very effective. The combination of ipatasertib with the MEK inhibitor selumetinib or the ERK inhibitor ravoxertinib resulted in additive and/or greater-than-additive cytotoxicity in approximately half the cell lines screened. The V600E mutation-specific BRAF inhibitor vemurafenib and the KRAS G12C selective inhibitor sotorasib in combination with ipatasertib were active in the eight BRAF V600E and four KRAS G12C mutant-containing cell lines, respectively. Vertical inhibition of the PI3K/AKT/mTOR pathway with the mTORC1/2 kinase inhibitor sapanisertib demonstrated additive and/or greater-than-additive effects in multiple cell lines. In early experiments, there was a correlation between the response to ipatasertib and selumetinib in two patient-derived tumor lines grown as mct-spheroids and the corresponding patient-derived xenografts. All data are accessible via the PubChem BioAssay public database.

## Linked entities

- **Genes:** PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) [NCBI Gene 5290], AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207], MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475], ras (resistance to audiogenic seizures) [NCBI Gene 19412], MAP2K7 (mitogen-activated protein kinase kinase 7) [NCBI Gene 5609], EPHB2 (EPH receptor B2) [NCBI Gene 2048], BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673], KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845]
- **Chemicals:** ipatasertib (PubChem CID 24788740), selumetinib (PubChem CID 10127622), ravoxertinib (PubChem CID 71727581), vemurafenib (PubChem CID 42611257), sotorasib (PubChem CID 137278711), sapanisertib (PubChem CID 45375953)

## Full-text entities

- **Genes:** BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673] {aka B-RAF1, B-raf, BRAF-1, BRAF1, NS7, RAFB1}, PTEN (phosphatase and tensin homolog) [NCBI Gene 5728] {aka 10q23del, BZS, CWS1, DEC, GLM2, MHAM}, MAP2K2 (mitogen-activated protein kinase kinase 2) [NCBI Gene 5605] {aka CFC4, MAPKK2, MEK2, MKK2, PRKMK2}, GNAQ (G protein subunit alpha q) [NCBI Gene 2776] {aka CMAL, G-ALPHA-q, GAQ, SWS}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, ESR1 (estrogen receptor 1) [NCBI Gene 2099] {aka ER, ESR, ESRA, ESTRR, Era, NR3A1}, AICDA (activation induced cytidine deaminase) [NCBI Gene 57379] {aka AID, ARP2, CDA2, HEL-S-284, HIGM2}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, ZHX2 (zinc fingers and homeoboxes 2) [NCBI Gene 22882] {aka AFR1, RAF}, PIK3CD (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta) [NCBI Gene 5293] {aka APDS, IMD14, IMD14A, IMD14B, P110DELTA, PI3K}, MAP2K7 (mitogen-activated protein kinase kinase 7) [NCBI Gene 5609] {aka JNKK2, MAPKK7, MEK, MEK 7, MKK7, PRKMK7}, MAP2K1 (mitogen-activated protein kinase kinase 1) [NCBI Gene 5604] {aka CFC3, MAPKK1, MEK1, MEL, MKK1, PRKMK1}, MAPK3 (mitogen-activated protein kinase 3) [NCBI Gene 5595] {aka ERK-1, ERK1, ERT2, HS44KDAP, HUMKER1A, P44ERK1}, NR4A1 (nuclear receptor subfamily 4 group A member 1) [NCBI Gene 3164] {aka GFRP1, HMR, N10, NAK-1, NGFIB, NP10}, APC (APC regulator of Wnt signaling pathway) [NCBI Gene 324] {aka BTPS2, DESMD, DP2, DP2.5, DP3, GS}, ATR (ATR checkpoint kinase) [NCBI Gene 545] {aka FCTCS, FRP1, MEC1, SCKL, SCKL1}, MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}, NFE2L2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 4780] {aka IMDDHH, NRF2, Nrf-2}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) [NCBI Gene 5290] {aka CCM4, CLAPO, CLOVE, CWS5, HMH, MCAP}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, AKT3 (AKT serine/threonine kinase 3) [NCBI Gene 10000] {aka MPPH, MPPH2, PKB-GAMMA, PKBG, PRKBG, RAC-PK-gamma}, AKT2 (AKT serine/threonine kinase 2) [NCBI Gene 208] {aka HIHGHH, PKBB, PKBBETA, PRKBB, RAC-BETA}
- **Diseases:** pancreas tumor (MESH:D010190), PDC (MESH:C537181), small-cell lung carcinoma (MESH:D055752), Merkel cell tumor (MESH:D015266), follicular lymphoma (MESH:D008224), melanoma (MESH:D008545), colon metastasis (MESH:D009362), non-small-cell lung cancers (MESH:D002289), colon, pancreatic, and melanoma (MESH:C563985), HNSCC (MESH:D000077195), uterine carcinosarcoma (MESH:D002296), colon carcinoma (MESH:D003110), colon (MESH:D003108), PNs (MESH:D018318), prostate cancer (MESH:D011471), breast (MESH:D061325), adenocarcinomas (MESH:D000230), Cancer (MESH:D009369), H&amp;N squamous carcinoma (MESH:D002294), leukemia (MESH:D007938), solid (MESH:D018250), ovarian carcinoma (MESH:D010051), prostate carcinoma (MESH:D011472), breast cancer (MESH:D001943), Toxicity (MESH:D064420)
- **Chemicals:** Ravoxertinib (MESH:C000619637), lipid (MESH:D008055), Ipatasertib (MESH:C583616), hydrocortisone (MESH:D006854), paclitaxel (MESH:D017239), NSC613327 (MESH:D000093542), nucleotide (MESH:D009711), Y-27632 (MESH:C108830), Sotorasib (MESH:C000706028), Selumetinib (MESH:C517975), Sapanisertib (MESH:C572449), staurosporine (MESH:D019311), DMSO (MESH:D004121), dabrafenib (MESH:C561627), streptomycin (MESH:D013307), CO2 (MESH:D002245), inositol phospholipids (MESH:D010716), adagrasib (MESH:C000718190), docetaxel (MESH:D000077143), everolimus (MESH:D000068338), adenine (MESH:D000225), fulvestrant (MESH:D000077267), Vemurafenib (MESH:D000077484), talazoparib (MESH:C586365), trypan blue (MESH:D014343), encorafenib (MESH:C000601108), venetoclax (MESH:C579720), BMS-387032 (MESH:C484864), idelalisib (MESH:C552946), ATP (MESH:D000255), Capivasertib (MESH:C575618), trametinib (MESH:C560077), Copanlisib (MESH:C000589253), penicillin (MESH:D010406), platinum (MESH:D010984), Dulbecco's modified Eagle's medium (-), adavosertib (MESH:C549567), L-glutamine (MESH:D005973), duvelisib (MESH:C586691)
- **Species:** Mycoplasma (genus) [taxon 2093], Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** V769A, A146T, V600E, L858R, G12S, serine/threonine, E545K, Y238C, R49H, R273C, G61A, C420R, D594N, V600K, G12V, H1047R, G466E
- **Cell lines:** H&amp;N — Homo sapiens (Human), Transformed cell line (CVCL_IQ01), MDA-MB-231 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0062), 941728-121-R-J1 — Homo sapiens (Human), Ovarian carcinosarcoma, Cancer cell line (CVCL_G294), PC-3 prostate carcinoma — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_M124), 521955-158-R2-J3 — Mus musculus (Mouse), Hybridoma (CVCL_9141), 349418-098 — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_JT92), 845751-090-R-J2 H&amp;N squamous carcinoma — Homo sapiens (Human), Transformed cell line (CVCL_F338), 282-377-053-R-J1 — Homo sapiens (Human), Lesch-Nyhan syndrome, Finite cell line (CVCL_L481), MCF7 breast carcinoma — Homo sapiens (Human), Breast carcinoma, Cancer cell line (CVCL_M364), LG-0567-F671 — Homo sapiens (Human), Transformed cell line (CVCL_9A83), 762968-020-R-J1 — Homo sapiens (Human), Glioblastoma, Cancer cell line (CVCL_UJ98), NCI60 — Homo sapiens (Human), Lung small cell carcinoma, Cancer cell line (CVCL_A592), Mct — Mus musculus (Mouse), Conditionally immortalized cell line (CVCL_IN71), MCT-Spheroid — Mus musculus (Mouse), Conditionally immortalized cell line (CVCL_A5BF), 817829-248-R- — Homo sapiens (Human), Adult acute myeloid leukemia with maturation, Cancer cell line (CVCL_UM46), 323695-272-R — Homo sapiens (Human), Transformed cell line (CVCL_K058), 138582-337-R-J1 — Homo sapiens (Human), Finite cell line (CVCL_9R18), 485368-065-R4 — Homo sapiens (Human), Melanoma, Cancer cell line (CVCL_EI52), SK-MEL-2 — Homo sapiens (Human), Melanoma, Cancer cell line (CVCL_0069), 171881-019-R-J1 — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_5989), SK-OV-3 ovarian carcinoma — Homo sapiens (Human), Ovarian serous cystadenocarcinoma, Cancer cell line (CVCL_0532), 885274-159-R- — Homo sapiens (Human), Lesch-Nyhan syndrome, Finite cell line (CVCL_L484), 417821-307-R- — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_JR24), HOP-62 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_1285), MALME-3M — Homo sapiens (Human), Melanoma, Cancer cell line (CVCL_1438), CC-2519 — Homo sapiens (Human), Transformed cell line (CVCL_AR05), line — Mus musculus (Mouse), Adenoma of the mouse pulmonary system, Cancer cell line (CVCL_5V03), DU-145 — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_0105), LG0703-F948 — Homo sapiens (Human), Scleromyxedema, Finite cell line (CVCL_IL05), MDA-MB-468 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0419), 616215-338-R-J1 — Homo sapiens (Human), Glycogen storage disease type II, Finite cell line (CVCL_1K47), Hs578T — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0332), 282377-053 — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_JT53)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12320941/full.md

## References

40 references — full list in the complete paper: https://tomesphere.com/paper/PMC12320941/full.md

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Source: https://tomesphere.com/paper/PMC12320941