# The transcriptome of the olm provides insights into its evolution and gene expression

**Authors:** Susanne Holtze, Defne Demirtürk, Oliver Ohlenschläger, Simon Hegele, Kanstantsin Siniuk, Silke Förste, Venket Raghavan, Marco Groth, Martin Bens, Nils Hassel, An Martel, Maja Lukač, Ivan Cizelj, Martin Fischer, Hequn Liu, Thomas B. Hildebrandt, Steve Hoffmann, Arne Sahm

PMC · DOI: 10.1038/s41598-025-10073-3 · Scientific Reports · 2025-08-03

## TL;DR

This paper studies the transcriptome of the olm, a long-lived cave-dwelling amphibian, to understand its unique adaptations and longevity.

## Contribution

The study presents the first comprehensive transcriptome of the olm, revealing organ-specific gene expression and evolutionary patterns.

## Key findings

- The brain has the highest number of organ-specific expressed genes in the olm.
- More genes are under strong negative selection than positive selection, especially in brain-specific genes.
- Processes under positive selection in the olm are similar to those in other long-lived species.

## Abstract

The olm (Proteus anguinus), with a predicted maximum lifespan of more than 100 years, is the longest-lived amphibian, which in addition possesses a range of unique adaptations to its dark, subterranean cave habitat. To assess the underlying molecular signatures, we present the first comprehensive transcriptome of the olm. Our study provides gene expression data across six organs and comparative genomics analyses, accessible via an interactive web server: http://comp-pheno.de/olm. The data uncover significant organ-specific gene expression, with the brain showing the highest number of organ-specific expressed genes. Our findings reveal significantly more genes under strong negative selection than positive selection, particularly in brain-specific expressed genes. Processes under positive selection in the olm resemble those in other long-lived species.

## Linked entities

- **Species:** Proteus anguinus (taxon 221568)

## Full-text entities

- **Genes:** COL4A5 (collagen type IV alpha 5 chain) [NCBI Gene 1287] {aka ASLN, ATS, ATS1, CA54}, BASP1 (brain abundant membrane attached signal protein 1) [NCBI Gene 10409] {aka CAP-23, CAP23, NAP-22, NAP22}, VIM (vimentin) [NCBI Gene 7431], AK1 (adenylate kinase 1) [NCBI Gene 203] {aka ADK, Adk1, CNSHA3, HTL-S-58j}, PRKAB1 (protein kinase AMP-activated non-catalytic subunit beta 1) [NCBI Gene 5564] {aka AMPK, HAMPKb}, AXIN2 (axin 2) [NCBI Gene 8313] {aka AXIL, ODCRCS}, IFT20 (intraflagellar transport 20) [NCBI Gene 90410], DAO (D-amino acid oxidase) [NCBI Gene 1610] {aka DAAO, DAMOX, OXDA}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, NDUFS4 (NADH:ubiquinone oxidoreductase subunit S4) [NCBI Gene 4724] {aka AQDQ, CI-18, CI-18 kDa, CI-AQDQ, MC1DN1}
- **Diseases:** lactic acidosis (MESH:D000140), progeroid syndrome (MESH:C536423), complex I deficiency (MESH:C537475), encephalopathy (MESH:D001927), death (MESH:D003643)
- **Chemicals:** ATP (MESH:D000255), PosiGene (-), metformin (MESH:D008687), Poly(A) (MESH:D011061), ADP (MESH:D000244), TRIzol (MESH:C411644), pentobarbital (MESH:D010424), fatty acids (MESH:D005227), water (MESH:D014867), S (MESH:D013455), ROS (MESH:D017382)
- **Species:** Bolitoglossa vallecula (bolitoglosse de Yarmal, species) [taxon 2055141], Batrachochytrium dendrobatidis (amphibian chytrid, species) [taxon 109871], Homo sapiens (human, species) [taxon 9606], Hynobius chinensis (Chinese salamander, species) [taxon 288313], Drosophila melanogaster (fruit fly, species) [taxon 7227], Necturus maculosus (mudpuppy, species) [taxon 42757], Heterocephalus glaber (naked mole rat, species) [taxon 10181], Taricha granulosa (rough-skinned newt, species) [taxon 8321], Ambystoma mexicanum (axolotl, species) [taxon 8296], Mus musculus (house mouse, species) [taxon 10090], Proteus anguinus (blind cave salamander, species) [taxon 221568], Batrachuperus yenyuanensis (Yenhuanhsien mountain salamander, species) [taxon 156990], Tylototriton wenxianensis (Wenxian knobby newt, species) [taxon 385678], Chiroptera (bats, order) [taxon 9397], Salamandra salamandra (European fire salamander, species) [taxon 57571], Caudata (salamanders, order) [taxon 8293], Batrachochytrium salamandrivorans (species) [taxon 1357716], Ranavirus (genus) [taxon 10492]
- **Mutations:** S139, alanine was replaced by serine, serine replaced by alanine, A139S, A139

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12319086/full.md

## References

1 references — full list in the complete paper: https://tomesphere.com/paper/PMC12319086/full.md

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Source: https://tomesphere.com/paper/PMC12319086