# Metagenome-informed metaproteomics methodology: a new breakthrough in revealing the mechanisms of host-microbiota-diet interactions in inflammatory bowel disease

**Authors:** Suqin Zhang, Qi Xu

PMC · DOI: 10.3389/fcell.2025.1634974 · Frontiers in Cell and Developmental Biology · 2025-07-21

## Full-text entities

- **Genes:** ENO1 (enolase 1) [NCBI Gene 2023] {aka ENO1-IT1, ENO1L1, HEL-S-17, MPB1, NNE, PPH}, LTF (lactotransferrin) [NCBI Gene 4057] {aka GIG12, HEL110, HLF2, LF}, BMP1 (bone morphogenetic protein 1) [NCBI Gene 649] {aka OI13, PCOLC, PCP, TLD}
- **Diseases:** UC (MESH:D003093), colitis (MESH:D003092), intestinal dysfunction (MESH:D007410), GER (MESH:D005764), IBD (MESH:D015212), autoinflammatory (MESH:D056660), CD (MESH:D003424), systemic inflammation (MESH:D007249), digestive system disease (MESH:D004066), ileocolonic-restricted disease (MESH:D002313)
- **Chemicals:** luminal (MESH:D010634), DSS (MESH:D016264), carbohydrate (MESH:D002241), AMP (MESH:D000089882)
- **Species:** Bifidobacterium adolescentis (species) [taxon 1680], Homo sapiens (human, species) [taxon 9606], Fusicatenibacter saccharivorans (species) [taxon 1150298], Akkermansia muciniphila (species) [taxon 239935], Alistipes putredinis (species) [taxon 28117], Oscillibacter sp. (species) [taxon 1945593], Streptococcus mutans (species) [taxon 1309], Faecalibacterium prausnitzii (species) [taxon 853], Mus musculus (house mouse, species) [taxon 10090], Phocaeicola vulgatus (species) [taxon 821], [Lactobacillus] rogosae (species) [taxon 706562], Bacteroides caccae (species) [taxon 47678]

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## References

12 references — full list in the complete paper: https://tomesphere.com/paper/PMC12319045/full.md

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Source: https://tomesphere.com/paper/PMC12319045