# Robust multi-task feature selection with counterfactual explanation for schizophrenia identification using functional brain networks

**Authors:** Xinyan Yuan, Shaolong Wei, Ying Sun, Lingling Gu, Yanyan He, Tiantian Chen, Hongcheng Yao, Haonan Rao

PMC · DOI: 10.3389/fnins.2025.1609547 · Frontiers in Neuroscience · 2025-07-21

## TL;DR

This paper introduces a method combining feature selection and counterfactual explanations to improve the accuracy and understanding of schizophrenia identification using brain networks.

## Contribution

A novel multi-task feature selection method with counterfactual explanations for schizophrenia identification using functional brain networks.

## Key findings

- The proposed method outperforms existing methods in classification accuracy for schizophrenia identification.
- The approach reveals key functional connectivity features associated with schizophrenia, enhancing clinical interpretability.

## Abstract

Functional brain networks measured by resting-state functional magnetic resonance imaging (rs-fMRI) have become a promising tool for understanding the neural mechanisms underlying schizophrenia (SZ). However, the high dimensionality of these networks and small sample sizes pose significant challenges for effective classification and model generalization.

We propose a robust multi-task feature selection method combined with counterfactual explanations to improve the accuracy and interpretability of SZ identification. rs-fMRI data are preprocessed to construct a functional connectivity matrix, and features are extracted by sorting the upper triangular elements. A multi-task feature selection framework based on the Gray Wolf Optimizer (GWO) is developed to identify abnormal functional connectivity (FC) features in SZ patients. A counterfactual explanation model is applied to reduce perturbations in abnormal FC features, returning the model prediction to normal and enhancing clinical interpretability.

Our method was tested on five real-world SZ datasets. The results demonstrate that the proposed method significantly outperforms existing methods in terms of classification accuracy while offering new insights into the analysis of SZ through improved feature selection and explanation.

The integration of multi-task feature selection and counterfactual explanation improves both the accuracy and interpretability of SZ identification. This approach provides valuable clinical insights by revealing the key functional connectivity features associated with SZ, which could assist in the development of more effective diagnostic tools.

## Linked entities

- **Diseases:** schizophrenia (MONDO:0005090)

## Full-text entities

- **Genes:** BCL2A1 (BCL2 related protein A1) [NCBI Gene 597] {aka ACC-1, ACC-2, ACC1, ACC2, BCL2L5, BFL1}, GPHA2 (glycoprotein hormone subunit alpha 2) [NCBI Gene 170589] {aka A2, GPA2, ZSIG51}, ATP6AP1 (ATPase H+ transporting accessory protein 1) [NCBI Gene 537] {aka 16A, ATP6IP1, ATP6S1, Ac45, CF2, VATPS1}
- **Diseases:** brain disease (MESH:D001927), PFC dysfunction (MESH:C536329), rare (MESH:D035583), NC (OMIM:617025), SZ (MESH:D012559), head trauma (MESH:D006259), anxiety (MESH:D001007), ACC (MESH:D004476), Mental Disorders (MESH:D001523), autism (MESH:D001321), FC abnormalities (MESH:D000014), Alzheimer's disease (MESH:D000544), hallucinations (MESH:D006212), HIP.L (MESH:D007926), cognitive dysfunction (MESH:D003072), delusions (MESH:D063726), function (MESH:D003291), drug abuse (MESH:D019966)
- **Chemicals:** GWO (-)
- **Species:** Canis lupus (gray wolf, species) [taxon 9612], Homo sapiens (human, species) [taxon 9606]

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12318991/full.md

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12318991/full.md

## References

46 references — full list in the complete paper: https://tomesphere.com/paper/PMC12318991/full.md

---
Source: https://tomesphere.com/paper/PMC12318991