# Bank1 deficiency reshapes the gut microbiota of lupus mice towards an anti-inflammatory composition

**Authors:** Georgina Galicia, María Botía-Sánchez, Daniel Toro-Dominguez, Ana López García, Juan Rafael Valera, Gonzalo Gómez Hernández, Raquel Marcos Fernandez, Noelia Carmona, Gracia Luque, María Morell, Nieves Varela, Francisco Pérez-Cozar, Abelardo Margolles, Margarita Aguilera, Marta E. Alarcón-Riquelme

PMC · DOI: 10.3389/fimmu.2025.1586025 · Frontiers in Immunology · 2025-07-21

## TL;DR

Bank1 deficiency in lupus mice changes gut bacteria to reduce inflammation and improve disease symptoms.

## Contribution

This study reveals that Bank1 deficiency promotes anti-inflammatory gut microbiota changes, particularly increasing Parabacteroides distasonis.

## Key findings

- Bank1 deficiency alters gut microbiota composition and increases Parabacteroides distasonis.
- Parabacteroides distasonis reduces lupus gut pathology and improves intestinal permeability.
- Lupus patients lack Parabacteroides distasonis in their blood microbiome compared to healthy controls.

## Abstract

The B-cell scaffold protein with ankyrin repeats (BANK1) regulates Toll-like receptor-7 (TLR7) signaling in B cells and its absence ameliorates lupus. Here, we investigated the involvement of Bank1 in the gut mucosal B cell response to commensals in a murine model of lupus. In health and disease, Bank1 deficiency resulted in changes in the intestinal IgA production levels that showed differential bacterial binding associated with a re-organization on the composition and structure of the gut microbiota. Furthermore, the amelioration of lupus gut pathology in mice lacking Bank1 was linked to the increase of Parabacteroides distasonis that when vertically transmitted or orally administered, as emerging probiotic, reduced disease severity and repaired signs of distorted intestinal permeability. The increase of P. distasonis directly correlated with anti-inflammatory processes. In vitro stimulation either with P. distasonis or via TLR9 allowed for the differentiation of IL-10 producing B cells which, in vivo, differentially accumulated in the Peyer´s patches of Bank1-deficient lupus mice. Finally, the blood microbiome of lupus patients was found to be devoid of P. distasonis, whereas healthy controls exhibited the bacterium, thereby supporting the protective role of P. distasonis in the disease.

## Linked entities

- **Genes:** BANK1 (B cell scaffold protein with ankyrin repeats 1) [NCBI Gene 55024], TLR7 (toll like receptor 7) [NCBI Gene 51284]
- **Diseases:** lupus (MONDO:0004670)
- **Species:** Parabacteroides distasonis (taxon 823)

## Full-text entities

- **Genes:** Sdc1 (syndecan 1) [NCBI Gene 20969] {aka CD138, Sstn, Synd, Synd1, syn-1}, Tgfb1 (transforming growth factor, beta 1) [NCBI Gene 21803] {aka TGF-beta1, TGFbeta1, Tgfb, Tgfb-1}, Ighd (immunoglobulin heavy constant delta) [NCBI Gene 380797] {aka IgD, Igh-5}, Itgax (integrin alpha X) [NCBI Gene 16411] {aka Cd11c, Cr4, N418}, Cd40lg (CD40 ligand) [NCBI Gene 21947] {aka CD154, CD40-L, Cd40l, HIGM1, IGM, IMD3}, Cd19 (CD19 antigen) [NCBI Gene 12478], Fcgr3 (Fc receptor, IgG, low affinity III) [NCBI Gene 14131] {aka CD16}, GZMB (granzyme B) [NCBI Gene 3002] {aka C11, CCPI, CGL-1, CGL1, CSP-B, CSPB}, Apc (APC regulator of WNT signaling pathway) [NCBI Gene 24205] {aka RATAPC}, ALB (albumin) [NCBI Gene 280717], BANK1 (B cell scaffold protein with ankyrin repeats 1) [NCBI Gene 55024] {aka BANK}, Apc (APC, WNT signaling pathway regulator) [NCBI Gene 11789] {aka CC1, Min, mAPC}, Ighm (immunoglobulin heavy constant mu) [NCBI Gene 16019] {aka Igh-6, Igh-M, Igh6, Igm, TC1460681, muH}, Tlr9 (toll-like receptor 9) [NCBI Gene 81897], Btk (Bruton agammaglobulinemia tyrosine kinase) [NCBI Gene 12229] {aka xid}, BCR (BCR activator of RhoGEF and GTPase) [NCBI Gene 613] {aka ALL, BCR1, CML, D22S11, D22S662, PHL}, Irf7 (interferon regulatory factor 7) [NCBI Gene 54123], Tlr7 (toll-like receptor 7) [NCBI Gene 170743], Stat1 (signal transducer and activator of transcription 1) [NCBI Gene 20846] {aka 2010005J02Rik}, Adgre1 (adhesion G protein-coupled receptor E1) [NCBI Gene 13733] {aka DD7A5-7, EGF-TM7, Emr1, F4/80, Gpf480, Ly71}, Cd4 (CD4 antigen) [NCBI Gene 12504] {aka L3T4, Ly-4}, Ifna4 (interferon alpha 4) [NCBI Gene 15967] {aka If1ai13, Ifa4}, D9Mgc45e (DNA segment, Chr 9, MRC UK Mouse Genome Centre 45 expressed) [NCBI Gene 28134] {aka CD3}, Trav6-3 (T cell receptor alpha variable 6-3) [NCBI Gene 328483] {aka Gm13948, Gm193, Gm4, TCR}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, FOXO1 (forkhead box O1) [NCBI Gene 2308] {aka FKH1, FKHR, FOXO1A}, CD38 (CD38 molecule) [NCBI Gene 952] {aka ADPRC 1, ADPRC1, cADPR1}, Bank1 (B cell scaffold protein with ankyrin repeats 1) [NCBI Gene 242248] {aka A530094C12Rik, AVIEF, BANK}, Ptprc (protein tyrosine phosphatase receptor type C) [NCBI Gene 19264] {aka B220, CD45R, Cd45, L-CA, Ly-5, Lyt-4}, CD40 (CD40 molecule) [NCBI Gene 958] {aka Bp50, CDW40, TNFRSF5, p50}, CD24 (CD24 molecule) [NCBI Gene 100133941] {aka CD24A}, Apoh (apolipoprotein H) [NCBI Gene 11818] {aka B2GPI, beta-2-GPI, beta2-GPI}, Il10 (interleukin 10) [NCBI Gene 16153] {aka CSIF, If2a, Il-10}, MYD88 (MYD88 innate immune signal transduction adaptor) [NCBI Gene 4615] {aka IMD68, MYD88D, WM1}, Fas (Fas cell surface death receptor) [NCBI Gene 14102] {aka APO1, APT1, CD95, TNFR6, Tnfrsf6, lpr}, Ifnb1 (interferon beta 1, fibroblast) [NCBI Gene 15977] {aka IFN-beta, IFNB, If1da1, Ifb}, Fcgr2b (Fc receptor, IgG, low affinity IIb) [NCBI Gene 14130] {aka CD32, F630109E10Rik, Fc[g]RII, FcgRII, Fcgr2, Fcgr2a}, Akt1 (Akt serine/threonine kinase 1) [NCBI Gene 11651] {aka Akt, LTR-akt, PKB, PKB/Akt, PKBalpha, Rac}, TRAF6 (TNF receptor associated factor 6) [NCBI Gene 7189] {aka MGC:3310, RNF85}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, Igha (immunoglobulin heavy constant alpha) [NCBI Gene 238447] {aka IgA, Igh-2}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, Cd40 (CD40 antigen) [NCBI Gene 21939] {aka Bp50, GP39, HIGM1, IGM, IMD3, T-BAM}, Epcam (epithelial cell adhesion molecule) [NCBI Gene 17075] {aka CD326, EGP, EGP-2, Egp314, Ep-CAM, EpCAM1}, Aicda (activation-induced cytidine deaminase) [NCBI Gene 11628] {aka Aid, Arp2}, Cldn1 (claudin 1) [NCBI Gene 12737], Tbx21 (T-box 21) [NCBI Gene 57765] {aka TBT1, Tbet, Tblym}, Itgam (integrin alpha M) [NCBI Gene 16409] {aka CD11b/CD18, CR3, CR3A, Cd11b, F730045J24Rik, Ly-40}
- **Diseases:** nonalcoholic fatty liver (MESH:D065626), necrosis (MESH:D009336), Alzheimer disease (MESH:D000544), DD (MESH:C536170), splenomegaly (MESH:D013163), autoimmune inflammation (MESH:D007249), tubular damage (MESH:D000230), Lupus (MESH:D008180), rheumatoid arthritis (MESH:D001172), lupus nephritis (MESH:D008181), autoimmune (MESH:D001327), dysbiosis (MESH:D064806), obesity (MESH:D009765), autoimmune diabetes (MESH:D003922), multiple sclerosis (MESH:D009103), Bank1 deficiency (MESH:D007153), Glomerular damage (MESH:D007674), glomerulonephritis (MESH:D005921), colitis (MESH:D003092), GC (MESH:C548085), mucosal injury (MESH:D052016)
- **Chemicals:** 2-oxoglutaric acid (MESH:D007656), 4-guanidino butyric acid (MESH:C001317), agarose (MESH:D012685), 3,3',5,5'-tetramethylbenzidine (MESH:C021758), solanidine (MESH:C013255), TBS (MESH:D013725), CpG. (MESH:C015772), oil (MESH:D009821), monensin (MESH:D008985), Water (MESH:D014867), PBS (MESH:D007854), N2 (MESH:D009584), N-acetyl leucine (MESH:C088117), OCT (MESH:C051883), amino acids (MESH:D000596), CO2 (MESH:D002245), inosine (MESH:D007288), FITC-Dextran (MESH:C015219), isopentane (MESH:C067038), streptomycin (MESH:D013307), agar (MESH:D000362), xylene (MESH:D014992), phosphocholine (MESH:D010767), adenine (MESH:D000225), DAPI (MESH:C007293), ethanol (MESH:D000431), N-formylmethionine (MESH:D009239), retinoic acid (MESH:D014212), Paraffin (MESH:D010232), xylazine (MESH:D014991), hematoxylin (MESH:D006416), ammonium formate (MESH:C030544), Aldara (MESH:D000077271), penicillin (MESH:D010406), periodic acid (MESH:D010504), Tween 20 (MESH:D011136), Alexa Fluor 488 (MESH:C000711379), cytosine (MESH:D003596), EDTA (MESH:D004492), H2 (-), Hoechst 33342 (MESH:C017807), ionomycin (MESH:D015759), formaldehyde (MESH:D005557), trehalose (MESH:D014199)
- **Species:** Acinetobacter guillouiae (species) [taxon 106649], Sutterella (genus) [taxon 40544], Helicobacter ganmani (species) [taxon 60246], Rattus norvegicus (brown rat, species) [taxon 10116], Parabacteroides distasonis (species) [taxon 823], Bacillus (genus) [taxon 55087], Oscillospira (genus) [taxon 119852], Allobaculum (genus) [taxon 174708], Thomasclavelia cocleata (species) [taxon 69824], Mus musculus (house mouse, species) [taxon 10090], Lactiplantibacillus plantarum (species) [taxon 1590], Bacteroides acidifaciens (species) [taxon 85831], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Actinomyces (genus) [taxon 1654], Butyricicoccus pullicaecorum (species) [taxon 501571], gut metagenome (species) [taxon 749906], Limosilactobacillus reuteri (species) [taxon 1598], [Clostridium] methylpentosum (species) [taxon 84026], Ovis aries (domestic sheep, species) [taxon 9940], Segatella copri (species) [taxon 165179], Rickettsia (genus) [taxon 780], Bifidobacterium pseudolongum (species) [taxon 1694], Akkermansia muciniphila (species) [taxon 239935], Enterobacteriaceae (enterobacteria, family) [taxon 543], Haemophilus parainfluenzae (species) [taxon 729], Corynebacterium (genus) [taxon 1716], Nevskia ramosa (species) [taxon 64002], Ligilactobacillus salivarius (species) [taxon 1624], Homo sapiens (human, species) [taxon 9606], Serratia marcescens (species) [taxon 615], Streptococcus (genus) [taxon 1301], Ruminococcus (genus) [taxon 1263]
- **Cell lines:** mLN — Bos taurus (Bovine), Transformed cell line (CVCL_A1BH)

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12318881/full.md

## References

54 references — full list in the complete paper: https://tomesphere.com/paper/PMC12318881/full.md

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Source: https://tomesphere.com/paper/PMC12318881