# Case Report: A novel t(15;17)(q24;q11.2) translocation involving NF1::SCAMP5 fusion in a patient with myeloproliferative neoplasms

**Authors:** Yuying Chang, Yakun Chen, Weiwei Zhao, Guomin Shen, Sujuan Guo, Wei Wang

PMC · DOI: 10.3389/fonc.2025.1600963 · Frontiers in Oncology · 2025-07-21

## TL;DR

A new NF1::SCAMP5 fusion was found in a patient with myeloproliferative neoplasm, suggesting a possible new subtype.

## Contribution

The discovery of a novel t(15;17)(q24;q11.2) translocation leading to NF1::SCAMP5 fusion in MPNs.

## Key findings

- A 69-year-old patient with MPN had a novel NF1::SCAMP5 fusion confirmed by RNA-Seq.
- The patient showed CALR exon 9 mutation and JAK2 V617F negativity with stable disease after treatment.
- The case suggests a new provisional MPN subtype with distinct genetic features.

## Abstract

Myeloproliferative neoplasms (MPNs) are a heterogeneous group of disorders characterized by the abnormal proliferation of terminally differentiated myeloid cells. While cytogenetic abnormalities such as t(15;17) are documented in MPNs, the specific translocation resulting in NF1::SCAMP5 fusion has not been previously reported. Here we present a 69-year-old female patient with anemia and splenomegaly, exhibiting CALR exon 9 mutation (c.1099_1150del52) and JAK2 V617F negativity. Cytogenetic analysis revealed t(15;17)(q24;q11.2), distinct from the classical APL-associated t(15;17)(q22;q21), with RNA-Seq confirming a novel NF1::SCAMP5 fusion. Bone marrow biopsy showed MF-1 fibrosis and megakaryocyte depletion, deviating from typical primary myelofibrosis histology. The patient achieved stable disease post-ruxolitinib treatment. This case highlights a unique molecular-pathological profile, suggesting NF1::SCAMP5 may define a provisional MPN subtype with distinct genetic features, warranting further study to elucidate its clinical significance.

## Linked entities

- **Genes:** NF1 (neurofibromin 1) [NCBI Gene 4763], SCAMP5 (secretory carrier membrane protein 5) [NCBI Gene 192683], CALR (calreticulin) [NCBI Gene 811], JAK2 (Janus kinase 2) [NCBI Gene 3717]
- **Chemicals:** ruxolitinib (PubChem CID 17754772)
- **Diseases:** myeloproliferative neoplasms (MONDO:0020076), anemia (MONDO:0002280), primary myelofibrosis (MONDO:0009692)

## Full-text entities

- **Genes:** CNTNAP1 (contactin associated protein 1) [NCBI Gene 8506] {aka CASPR, CHN3, CNTNAP, NRXN4, P190}, Zhx2 (zinc fingers and homeoboxes 2) [NCBI Gene 387609] {aka Afr-1, Afr1, Raf, mKIAA0854}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, SDC1 (syndecan 1) [NCBI Gene 6382] {aka CD138, SDC, SYND1, syndecan}, WT1 (WT1 transcription factor) [NCBI Gene 7490] {aka AWT1, GUD, NPHS4, WAGR, WIT-2, WT-1}, GP1BA (glycoprotein Ib platelet subunit alpha) [NCBI Gene 2811] {aka BDPLT1, BDPLT3, BSS, CD42B, CD42b-alpha, DBPLT3}, Calr (calreticulin) [NCBI Gene 12317] {aka CRT, Calregulin}, NRAS (NRAS proto-oncogene, GTPase) [NCBI Gene 4893] {aka ALPS4, CMNS, N-ras, NCMS, NRAS1, NS6}, MPL (MPL proto-oncogene, thrombopoietin receptor) [NCBI Gene 4352] {aka C-MPL, CD110, MPLV, THCYT2, THPOR, TPOR}, Rasa1 (RAS p21 protein activator 1) [NCBI Gene 218397] {aka Gap, RasGAP, Rasa}, NUMA1 (nuclear mitotic apparatus protein 1) [NCBI Gene 4926] {aka NMP-22, NUMA}, CALR (calreticulin) [NCBI Gene 811] {aka CALR1, CRT, HEL-S-99n, RO, SSA, cC1qR}, JAK2 (Janus kinase 2) [NCBI Gene 3717] {aka JTK10}, NF1 (neurofibromin 1) [NCBI Gene 4763] {aka NFNS, VRNF, WSS}, Mx1 (MX dynamin-like GTPase 1) [NCBI Gene 17857] {aka Mx, Mx-1}, NPM1 (nucleophosmin 1) [NCBI Gene 4869] {aka B23, NPM}, MPO (myeloperoxidase) [NCBI Gene 4353], RARA (retinoic acid receptor alpha) [NCBI Gene 5914] {aka NR1B1, RAR, RARalpha}, CBL (Cbl proto-oncogene) [NCBI Gene 867] {aka C-CBL, CBL2, FRA11B, NSLL, RNF55}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, LYZ (lysozyme) [NCBI Gene 4069] {aka AMYLD5, LYZF1, LZM}, ZHX2 (zinc fingers and homeoboxes 2) [NCBI Gene 22882] {aka AFR1, RAF}, PML (PML nuclear body scaffold) [NCBI Gene 5371] {aka MYL, PP8675, RNF71, TRIM19}, Nf1 (neurofibromin 1) [NCBI Gene 18015] {aka Dsk9, E030030H24Rik, Mhdadsk9, Nf-1}, Mapk1 (mitogen-activated protein kinase 1) [NCBI Gene 26413] {aka 9030612K14Rik, ERK, Erk2, MAPK2, PRKM2, Prkm1}, KRT20 (keratin 20) [NCBI Gene 54474] {aka CD20, CK-20, CK20, K20, KRT21}, GOLGA4 (golgin A4) [NCBI Gene 2803] {aka CRPF46, GCP2, GOLG, MU-RMS-40.18, p230}, ABL1 (ABL proto-oncogene 1, non-receptor tyrosine kinase) [NCBI Gene 25] {aka ABL, BCR-ABL, CHDSKM, JTK7, bcr/abl, c-ABL}, ZBTB16 (zinc finger and BTB domain containing 16) [NCBI Gene 7704] {aka PLZF, ZNF145}, SCAMP5 (secretory carrier membrane protein 5) [NCBI Gene 192683], TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, PTPN11 (protein tyrosine phosphatase non-receptor type 11) [NCBI Gene 5781] {aka BPTP3, CFC, JMML, METCDS, NS1, PTP-1D}, NCAM1 (neural cell adhesion molecule 1) [NCBI Gene 4684] {aka CD56, MSK39, NCAM}, Mdk (midkine) [NCBI Gene 17242] {aka MK, Mek}
- **Diseases:** APL (MESH:D015473), AML (MESH:D015470), organomegaly (MESH:D016878), MF-1 (MESH:C538557), essential thrombocytosis (MESH:D013922), erythroid hypoplasia (MESH:D029503), esophageal cancer (MESH:D004938), Parkinson's disease (MESH:D010300), breast cancer (MESH:D001943), lung cancer (MESH:D008175), hematopoiesis (MESH:C536227), enlarged spleen (MESH:D013163), chronic myelogeous leukemia (MESH:D015451), CML (MESH:D015464), Hyperplasia (MESH:D006965), bladder cancer (MESH:D001749), infection (MESH:D007239), emphysema (MESH:D004646), polycythemia vera (MESH:D011087), PMF (MESH:D055728), trisomy 8 (MESH:C537942), MPN (MESH:D009369), chronic cholecystitis (MESH:D002764), platelet aggregation (MESH:D001791), MF-1 fibrosis (MESH:D005355), monocytosis (MESH:C538328), myeloid leukemia (MESH:D007951), Philadelphia chromosome-negative MPNs (MESH:D010677), melanoma (MESH:D008545), essential thrombocythemia (MESH:D013920), pancreatic adenocarcinoma (MESH:D010190), allergy (MESH:D004342), neutrophilia (MESH:C563010), JMML (MESH:D007938), myeloproliferative (MESH:D009196), pleural hypertrophy (MESH:D006984), hypocellular marrow (MESH:D001855), CA (MESH:D002869), hematopoietic disorders (MESH:D019337), anemia (MESH:D000740)
- **Chemicals:** amantadine (MESH:D000547), calcium (MESH:D002118), Antan (-), ruxolitinib (MESH:C540383), PD0325901 (MESH:C506614), Hematoxylin (MESH:D006416)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** c. 1099_1150del52, JAK2 V617F, JAK2 V617F, p.L367fs*46, c.1099_1150del52

## Full text

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## References

32 references — full list in the complete paper: https://tomesphere.com/paper/PMC12318764/full.md

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Source: https://tomesphere.com/paper/PMC12318764