# Case Report: Pediatric CNS-isolated hemophagocytic lymphohistiocytosis secondary to uniparental disomy of PRF1 mutation

**Authors:** Jiao Xue, Zhenfeng Song, Hongshan Zhao, Chengqing Yang, Fei Li, Zhi Yi, Kaixuan Liu, Ying Zhang

PMC · DOI: 10.3389/fgene.2025.1528844 · Frontiers in Genetics · 2025-07-21

## TL;DR

A 5-year-old girl with rare CNS-isolated hemophagocytic lymphohistiocytosis was found to have a PRF1 gene mutation due to uniparental disomy.

## Contribution

This is the first reported case linking CNS-HLH to a PRF1 mutation via uniparental disomy.

## Key findings

- A homozygous missense mutation in PRF1 (c.1349C > T) was identified in the patient.
- The mutation was confirmed to be maternal uniparental disomy.
- The patient showed absence of perforin expression, supporting the CNS-HLH diagnosis.

## Abstract

Central nervous system-isolated hemophagocytic lymphohistiocytosis (CNS-HLH) is a rare disease caused by mutations in several genes.

Clinical information was obtained from medical records. Genetic analyses were performed using whole-exome sequencing (WES). NK cell function testing, Granzyme B staining, perforin staining, CD107a mobilization, and soluble CD25 levels were determined.

We report the case of a 5-year-old girl who presented with involuntary movements, an unsteady gait, and a progressively irritable temper. Cranial MRI revealed bilateral multifocal white matter abnormalities. The patient harbored a homozygous missense mutation in the PRF1 gene (NM_001083116.3), c.1349C > T (p.Thr450Met), which is a maternal uniparental disomy. Based on the phenotype and absence of perforin expression, the patient was diagnosed with CNS-HLH.

We report a highly unusual case of CNS-HLH diagnosed by uniparental disomy of a PRF1 mutation. Exome sequencing should be considered in patients with chronic or recurrent brain inflammation who show partial or no response to conventional treatment regimens.

## Linked entities

- **Genes:** PRF1 (perforin 1) [NCBI Gene 5551]
- **Diseases:** hemophagocytic lymphohistiocytosis (MONDO:0015540)

## Full-text entities

- **Genes:** GFAP (glial fibrillary acidic protein) [NCBI Gene 2670] {aka ALXDRD}, ITK (IL2 inducible T cell kinase) [NCBI Gene 3702] {aka EMT, LPFS1, LYK, PSCTK2}, MOG (myelin oligodendrocyte glycoprotein) [NCBI Gene 4340] {aka BTN6, BTNL11, MOGIG2, NRCLP7}, GZMB (granzyme B) [NCBI Gene 3002] {aka C11, CCPI, CGL-1, CGL1, CSP-B, CSPB}, XIAP (X-linked inhibitor of apoptosis) [NCBI Gene 331] {aka API3, BIRC4, IAP-3, ILP1, MIHA, XLP2}, GZMB (granzyme B) [NCBI Gene 452825], PRF1 (perforin 1) [NCBI Gene 5551] {aka HPLH2, P1, PFP}, LAMP1 (lysosome associated membrane protein 1) [NCBI Gene 3916] {aka CD107a, LAMPA, LGP120}, DRD2 (dopamine receptor D2) [NCBI Gene 1813] {aka D2DR, D2R}, GRM5 (glutamate metabotropic receptor 5) [NCBI Gene 2915] {aka GPRC1E, MGLUR5, PPP1R86, mGlu5}, IL2RA (interleukin 2 receptor subunit alpha) [NCBI Gene 3559] {aka CD25, IDDM10, IL2R, IMD41, TCGFR, p55}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, GAD2 (glutamate decarboxylase 2) [NCBI Gene 2572] {aka GAD65}, STXBP2 (syntaxin binding protein 2) [NCBI Gene 6813] {aka Hunc18b, MUNC18-2, UNC18-2, UNC18B, pp10122, unc-18B}, MAGT1 (magnesium transporter 1) [NCBI Gene 84061] {aka CDG1CC, IAP, MRX95, OST3B, PRO0756, SLC58A1}, DPP6 (dipeptidyl peptidase like 6) [NCBI Gene 1804] {aka DPL1, DPPX, MRD33, VF2}, CNTNAP2 (contactin associated protein 2) [NCBI Gene 26047] {aka AUTS15, CASPR2, CDFE, NRXN4, PTHSL1}, IGLON5 (IgLON family member 5) [NCBI Gene 402665], SH2D1A (SH2 domain containing 1A) [NCBI Gene 4068] {aka DSHP, EBVS, IMD5, LYP, MTCP1, SAP}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, CD27 (CD27 molecule) [NCBI Gene 939] {aka S152, S152. LPFS2, T14, TNFRSF7, Tp55}, RAB27A (RAB27A, member RAS oncogene family) [NCBI Gene 5873] {aka GS2, HsT18676, RAB27, RAM}, LYST (lysosomal trafficking regulator) [NCBI Gene 1130] {aka CHS, CHS1, Mauve}, LGI1 (leucine rich glioma inactivated 1) [NCBI Gene 9211] {aka ADLTE, ADPAEF, ADPEAF, DEE121, EPITEMPIN, EPT}, AP3B1 (adaptor related protein complex 3 subunit beta 1) [NCBI Gene 8546] {aka ADTB3, ADTB3A, HPS, HPS2, PE}, UNC13D (unc-13 homolog D) [NCBI Gene 201294] {aka HLH3, HPLH3, Munc13-4}, STX11 (syntaxin 11) [NCBI Gene 8676] {aka FHL4, HLH4, HPLH4}
- **Diseases:** headache (MESH:D006261), white matter abnormalities (MESH:D056784), Central nervous system-isolated hemophagocytic lymphohistiocytosis (MESH:D051359), death (MESH:D003643), systemic (MESH:D015619), encephalopathy (MESH:D001927), hepatosplenomegaly (MESH:C535727), gait ataxia (MESH:D020234), hypotonia (MESH:D009123), autoimmune encephalitis (MESH:D020274), involuntary movement (MESH:D020820), hypertriglyceridemia (MESH:D015228), tremors (MESH:D014202), hepatomegaly (MESH:D006529), autoimmune demyelinating disease (MESH:D020278), seizures (MESH:D012640), abnormality of the cranial nerves (MESH:D003389), irritability (MESH:D001523), hyperinflammatory syndrome (MESH:D013577), epileptic (MESH:D004827), meningismus (MESH:D008580), hypofibrinogenemia (MESH:D000347), fever (MESH:D005334), neurological (MESH:D009461), PVS (MESH:D018458), splenomegaly (MESH:D013163), pleocytosis (MESH:D007964), dysmetria (MESH:D002524), lymph node swelling (MESH:D000072717), edema (MESH:D004487), Hemorrhage (MESH:D006470), brain inflammation (MESH:D004660), liver dysfunction (MESH:D017093), pancytopenia (MESH:D010198), CNS diseases (MESH:D002493), multiorgan failure (MESH:D051437), inflammation (MESH:D007249), coagulation abnormalities (MESH:D001778), Maternal uniparental disomy (MESH:D024182), neuroinflammatory (MESH:D000090862)
- **Chemicals:** Triglycerides (MESH:D014280), methylprednisolone (MESH:D008775), glucose (MESH:D005947), amino acid (MESH:D000596), IVMP (-), steroid (MESH:D013256)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** Pro187Ser, Thr450Met

## Full text

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## References

16 references — full list in the complete paper: https://tomesphere.com/paper/PMC12318711/full.md

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Source: https://tomesphere.com/paper/PMC12318711