# Chromosome 1p31.1 Deletion: A Case With Developmental Delay, Hypotonia, Cryptorchidism, Abnormal Oral Frenulum, and Feet Deformity

**Authors:** Tatiana Mikhailova, Ria Garg

PMC · DOI: 10.1155/crig/6152118 · Case Reports in Genetics · 2025-07-27

## TL;DR

This paper reports a rare chromosomal deletion case with unique features like abnormal oral frenulum and feet deformity.

## Contribution

The study adds a new case of 1p31.1 deletion with a unique combination of clinical features, including thickened oral frenulum.

## Key findings

- A 14.385 Mb deletion in 1p31.1 encompassing 41 genes was identified.
- The case exhibited microcephaly, hypotonia, developmental delay, and flat feet.
- Congenital thickening of the lingual and labial frenulum was observed, a feature not previously associated with this deletion.

## Abstract

Deletions within the chromosomal locus 1p31.1 are rare, with only a limited number of documented cases. The typical clinical presentation includes intellectual disability, failure to thrive, and craniofacial abnormalities. Some cases may also present with cardiac, gastrointestinal, and genitourinary malformations. Variability in deletion size contributes to a broad spectrum of clinical phenotypes, and a comprehensive understanding of the syndrome's manifestations is still evolving. This case study aims to provide additional insights into 1p31.1 microdeletion syndrome, enhancing knowledge of its genetic and phenotypic characteristics to improve recognition by clinicians. Here, we report a case featuring a 14.385 Mb deletion isolated to the 1p31.1 region, encompassing 41 genes. The deletion manifested with microcephaly, distinctive facial morphology, hypotonia, developmental delay, bilateral cryptorchidism, and flat feet. Notably, our case also exhibited congenital thickening of the lingual and labial frenulum, a trait not typically associated with this deletion.

## Linked entities

- **Diseases:** cryptorchidism (MONDO:0009047)

## Full-text entities

- **Genes:** LRRC7 (leucine rich repeat containing 7) [NCBI Gene 57554] {aka DENSIN, MRD77}, FGFR2 (fibroblast growth factor receptor 2) [NCBI Gene 2263] {aka BBDS, BEK, BFR-1, CD332, CEK3, CFD1}, MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}, NEGR1 (neuronal growth regulator 1) [NCBI Gene 257194] {aka DMML2433, IGLON4, KILON, Ntra}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}
- **Diseases:** cardiac anomalies (MESH:D006331), open-mouth posture (MESH:D009059), mitral valve prolapse (MESH:D008945), difficulty with head and chest lifting (MESH:D006258), impulsivity (MESH:D007174), dysmorphic (MESH:D057215), facial dysmorphic features (MESH:C536503), congenital malformations (OMIM:163000), pulmonary valve stenosis (MESH:D011666), impairment and oculomotor (MESH:D015840), microcephaly (MESH:D008831), RD (MESH:D000077733), Frenulum abnormalities (MESH:D000014), respiratory distress (MESH:D012128), growth restriction (MESH:D005317), dental misalignment (MESH:D017760), dental malocclusion (MESH:D008310), ventricular septal defect (MESH:D006345), MVP (OMIM:157700), 1p31.1 deletion syndrome (MESH:C535593), hyperactivity (MESH:D006948), delays in motor and speech development (MESH:D007805), infections (MESH:D007239), foot abnormalities (MESH:D005534), abnormal gait (MESH:D020233), micrognathia (MESH:D008844), low (MESH:D009800), Oral Frenulum (MESH:D020820), learning impairment (MESH:D007859), intellectual disability (MESH:D008607), pulmonary hypertension (MESH:D006976), genetic defects (MESH:D030342), congenital hypopituitarism (MESH:D007018), systemic abnormalities (MESH:D015619), craniofacial abnormalities (MESH:D019465), hypothermia (MESH:D007035), hypoglycemia (MESH:D007003), failure to thrive (MESH:D005183), seizures (MESH:D012640), toe deformities (MESH:D000070592), malalignment of mandibular incisors (MESH:D008338), diabetes (MESH:D003920), Feet Deformity (MESH:D017719), language impairment (MESH:D007806), Cognitive delay (MESH:D003072), lack (MESH:D001259), dysmorphic features (MESH:D000013), PVS (MESH:D018458), low-set ears (MESH:C537239), torsion (MESH:D050723), patent foramen ovale (MESH:D054092), weight gain (MESH:D015430), dental anomalies (OMIM:614188), inattention (MESH:D001308), inability to (MESH:C564980), joint laxity (MESH:D007593), nutritional deficiencies (MESH:D044342), hyperopia (MESH:D006956), Developmental Delay (MESH:D002658), attention and memory deficits (MESH:D001289)
- **Chemicals:** alcohol (MESH:D000438), medium-chain Acyl-CoA. (-)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Nicotiana tabacum (American tobacco, species) [taxon 4097], Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

1 figure with captions in the complete paper: https://tomesphere.com/paper/PMC12318624/full.md

## References

22 references — full list in the complete paper: https://tomesphere.com/paper/PMC12318624/full.md

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Source: https://tomesphere.com/paper/PMC12318624