# PIPKIγ promotes non-homologous end joining through LIG4 to enhance radiotherapy resistance in triple-negative breast cancer

**Authors:** Wenge Dong, Haiping Zhang, Zhigang Zhuang, Ying Jiang

PMC · DOI: 10.1038/s41419-025-07894-5 · Cell Death & Disease · 2025-07-31

## TL;DR

This study shows that PIPKIγ helps repair DNA damage in a type of breast cancer, making it resistant to radiation therapy.

## Contribution

The novel contribution is identifying PIPKIγ's role in promoting DNA repair through LIG4, leading to radioresistance in triple-negative breast cancer.

## Key findings

- PIPKIγ overexpression enhances nonhomologous end joining (NHEJ) in triple-negative breast cancer (TNBC).
- PIPKIγ interacts with LIG4 to improve DNA repair efficiency and genomic stability in TNBC cells.
- Elevated PIPKIγ levels increase radioresistance in TNBC xenograft models.

## Abstract

Triple-negative breast cancer (TNBC) is an aggressive subtype of breast cancer with poor prognosis and limited therapeutic options. DNA damage-based radiotherapy plays a significant role in the treatment of TNBC. However, radioresistance continues to pose a significant challenge, often resulting in the unsuccessful outcome of radiation therapy for patients with TNBC. Type I gamma phosphatidylinositol phosphate kinase (PIPKIγ), a key enzyme in phosphoinositide metabolism, is associated with poor prognostic outcomes in TNBC. Here, we discovered that PIPKIγ overexpression significantly boosts nonhomologous end joining (NHEJ), a principal mechanism for repairing DNA double-strand breaks (DSBs). This enhancement of NHEJ confers increased radioresistance in TNBC. At the molecular level, PIPKIγ directly interacts with LIG4, a crucial NHEJ component, and strengthens its interaction with XRCC4, a key regulator of LIG4 nuclear translocation. This facilitates LIG4’s nuclear translocation, improving DNA repair efficiency and genomic stability in TNBC cells. Furthermore, elevated PIPKIγ levels enhance radioresistance in TNBC cells and tumors in xenograft models, whereas depleting PIPKIγ has the opposite effects. These insights reveal a new mechanism by which PIPKIγ promotes radioresistance through the facilitation of DSBs repair in TNBC. Collectively, our findings suggest that the PIPKIγ-LIG4 interaction represents a potential therapeutic target for improving radiotherapy efficacy in TNBC patients.

## Linked entities

- **Genes:** LIG4 (DNA ligase 4) [NCBI Gene 3981], XRCC4 (X-ray repair cross complementing 4) [NCBI Gene 7518]
- **Proteins:** LIG4 (DNA ligase 4), XRCC4 (X-ray repair cross complementing 4)
- **Diseases:** triple-negative breast cancer (MONDO:0005494), breast cancer (MONDO:0004989)

## Full-text entities

- **Genes:** PGR (progesterone receptor) [NCBI Gene 5241] {aka NR3C3, PR}, PKP2 (plakophilin 2) [NCBI Gene 5318] {aka ARVD9}, EREG (epiregulin) [NCBI Gene 2069] {aka EPR, ER, Ep}, PIP4K2A (phosphatidylinositol-5-phosphate 4-kinase type 2 alpha) [NCBI Gene 5305] {aka PI5P4KA, PIP5K2A, PIP5KII-alpha, PIP5KIIA, PIPK}, NHEJ1 (non-homologous end joining factor 1) [NCBI Gene 79840] {aka IMD124, MCOPCB13, XLF}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, BUB1 (BUB1 mitotic checkpoint serine/threonine kinase) [NCBI Gene 699] {aka BUB1A, BUB1L, MCPH30, hBUB1}, PPP1CC (protein phosphatase 1 catalytic subunit gamma) [NCBI Gene 5501] {aka PP-1G, PP1C, PPP1G}, XRCC4 (X-ray repair cross complementing 4) [NCBI Gene 7518] {aka SSMED, hXRCC4}, VAV2 (vav guanine nucleotide exchange factor 2) [NCBI Gene 7410] {aka VAV-2}, PRKDC (protein kinase, DNA-activated, catalytic subunit) [NCBI Gene 5591] {aka DNA-PKC, DNA-PKcs, DNAPK, DNAPKc, DNPK1, HYRC}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, LMNA (lamin A/C) [NCBI Gene 4000] {aka CDCD1, CDDC, CMD1A, CMT2B1, EMD2, FPL}, LIG4 (DNA ligase 4) [NCBI Gene 3981] {aka LIG4S}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, METTL1 (methyltransferase 1, tRNA methylguanosine) [NCBI Gene 4234] {aka C12orf1, TRM8, TRMT8, YDL201w}, ESR1 (estrogen receptor 1) [NCBI Gene 2099] {aka ER, ESR, ESRA, ESTRR, Era, NR3A1}, PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}, XRCC6 (X-ray repair cross complementing 6) [NCBI Gene 2547] {aka CTC75, CTCBF, G22P1, KU70, ML8, TLAA}, XRCC5 (X-ray repair cross complementing 5) [NCBI Gene 7520] {aka KARP-1, KARP1, KU80, KUB2, Ku86, NFIV}, COX8A (cytochrome c oxidase subunit 8A) [NCBI Gene 1351] {aka COX, COX8, COX8-2, COX8L, MC4DN15, VIII}
- **Diseases:** esophageal squamous cell carcinoma (MESH:D000077277), degenerative disc disease (MESH:D055959), Tumor (MESH:D009369), G1 (MESH:C564173), osteoarthritis (MESH:D010003), hepatocellular carcinoma (MESH:D006528), nasopharyngeal carcinoma (MESH:D000077274), metastasis (MESH:D009362), BC (MESH:D001943), age-related diseases (MESH:D010024), lung cancer (MESH:D008175), cytotoxic (MESH:D064420), TNBC (MESH:D064726), colorectal cancer (MESH:D015179), immunodeficiency (MESH:D007153), LIG4 deficiency (MESH:C564694)
- **Chemicals:** pyrazine (MESH:D011719), streptomycin (MESH:D013307), CO2 (MESH:D002245), doxycycline (MESH:D004318), essential amino acids (MESH:D000601), oxaliplatin (MESH:D000077150), lipid (MESH:D008055), penicillin (MESH:D010406), platinum (MESH:D010984), NEAA (-), PIP2 (MESH:D019269), EdU (MESH:C022811), phosphoinositide (MESH:D010716)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Mycoplasma (genus) [taxon 2093], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** D253N, D316K
- **Cell lines:** D4a — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_RG59), MCF-10A — Homo sapiens (Human), Spontaneously immortalized cell line (CVCL_0598), MDA-MB-231 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0062), SUM159PT — Homo sapiens (Human), Breast pleomorphic carcinoma, Cancer cell line (CVCL_5423), CLZ3 — Mus musculus (Mouse), Hybridoma (CVCL_C6V6), HCA2-H15c — Homo sapiens (Human), Rectosigmoid adenocarcinoma, Cancer cell line (CVCL_2056), HEK293T — Homo sapiens (Human), Transformed cell line (CVCL_0063)

## Full text

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## Figures

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## References

5 references — full list in the complete paper: https://tomesphere.com/paper/PMC12314031/full.md

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Source: https://tomesphere.com/paper/PMC12314031