# Comparison of suansun fermentation methods based on SBSE-GC-MS combined with SVM machine learning

**Authors:** Jianwen Wu, Yizhao Li, Mi Qiu, Jihua Guan

PMC · DOI: 10.3389/fmicb.2025.1598252 · Frontiers in Microbiology · 2025-07-15

## TL;DR

This study compares three Suansun fermentation methods using chemical and microbial analysis combined with machine learning to determine which produces the best flavor profile.

## Contribution

The study introduces a novel combination of SBSE-GC-MS, electronic nose, 16S rRNA, and SVM machine learning for comprehensive discrimination of Suansun fermentation methods.

## Key findings

- Natural water-sealed fermentation produced the highest concentration of key flavor compounds.
- The SVM model achieved a 100% discrimination rate among the three fermentation methods.
- Weissella was found to significantly contribute to the production of p-cresol in natural water-sealed fermentation.

## Abstract

This study aimed to analyze the flavor profile and microbial community structure of 54 Suansun samples, fermented using three different methods: direct fermentation, natural water-sealed fermentation, and natural fermentation. The combination of SBSE-GC-MS, electronic nose, 16S rRNA, and SVM machine learning was used for comprehensive discrimination.

The flavor components and microbial community structure were analyzed using SBSE-GC-MS, electronic nose, and 16S rRNA sequencing. SVM machine learning was employed to classify the samples based on their characteristics.

A total of 114 common aroma components were identified, including esters, alcohols, hydrocarbons, ketones, acids, aldehydes, heterocyclic compounds, phenols, halogenated hydrocarbons, amides, and others. Using a p < 0.05 and VIP > 1 threshold, 27 key characteristic flavor compounds were identified, with the highest concentration found in the natural water-sealed fermentation method. The SVM model achieved a 100% discrimination rate. Dominant bacterial genera identified across the methods were Lactiplantibacillus, Lactococcus, Weissella, and Limosilactobacillus, with a 95.65% match between dominant genera and key flavor compounds in natural water-sealed fermentation.

The study highlights that natural water-sealed fermentation is the most effective method for enhancing flavor profiles, and that Weissella plays a significant role in the production of key flavor compounds, particularly p-cresol, which increased over 600 times in natural water-sealed fermentation. Direct fermentation significantly shortens the fermentation cycle, while natural water-sealed fermentation offers the best results in terms of flavor development.

## Linked entities

- **Chemicals:** p-cresol (PubChem CID 2879)

## Full-text entities

- **Diseases:** COVID-19 (MESH:D000086382), E-nose (MESH:C000719218), MPS (MESH:D009084)
- **Chemicals:** water (MESH:D014867), oxygen (MESH:D010100), acetic acid (MESH:D019342), ethidium bromide (MESH:D004996), sulfides (MESH:D013440), lactic acid (MESH:D019344), nitrite (MESH:D009573), lignin (MESH:D008031), saline (MESH:D012965), ethyl acetate (MESH:C007650), p-cresol (MESH:C032538), Amides (MESH:D000577), 1-butyl 2-cyclohexyl ester (-), quartz (MESH:D011791), phenols (MESH:D010636), halogenated hydrocarbons (MESH:D006846), carbon (MESH:D002244), 2,4,6-trimethylpyridine (MESH:C007106), hexanol (MESH:D000441), hemicellulose (MESH:C007916), S-adenosylmethionine (MESH:D012436), acids (MESH:D000143), carbamic acid (MESH:C070766), alcohols (MESH:D000438), p-hydroxyphenylpyruvate (MESH:C010590), hydrocarbon (MESH:D006838), tyrosine (MESH:D014443), agarose (MESH:D012685), Esters (MESH:D004952), He (MESH:D006371), phenol (MESH:D019800), L-histidine (MESH:D006639), L-phenylalanine (MESH:D010649), HS (MESH:D006859), valeraldehyde (MESH:C046012), aldehyde (MESH:D000447), ketones (MESH:D007659), alkanes (MESH:D000473), heterocyclic compounds (MESH:D006571)
- **Species:** Weissella (genus) [taxon 46255], Weissella sp. (species) [taxon 1896315], Lactococcus (lactic streptococci, genus) [taxon 1357], Dendrocalamus latiflorus (sweet bamboo, species) [taxon 257763], Bambuseae (bamboo, tribe) [taxon 147376], Lactiplantibacillus plantarum (species) [taxon 1590], Leuconostoc sp. (species) [taxon 1930076], Pediococcus pentosaceus (species) [taxon 1255], Latilactobacillus curvatus (species) [taxon 28038], Clostridioides difficile (species) [taxon 1496], Actinomyces (genus) [taxon 1654], Enterococcus (genus) [taxon 1350], Oryza sativa (Asian cultivated rice, species) [taxon 4530], Comamonas (genus) [taxon 283]

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12312013/full.md

## References

36 references — full list in the complete paper: https://tomesphere.com/paper/PMC12312013/full.md

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Source: https://tomesphere.com/paper/PMC12312013