# Analysis of hepatitis B virus integration identifies KMT2B as a novel cancer‐related gene in pancreatic cancer

**Authors:** Mengge Li, Huimin Li, Dejun Liu, Shunan Liu, Hui Yuan, Yan Wu, Min Du, Yuan Fang, Jin Li, Hui Cong, Dan Zhao, Chunsun Fan, Qing Wang, Cenkai Shen, Yu Gan, Yongwei Sun, Hong Tu

PMC · DOI: 10.1002/ctm2.70424 · Clinical and Translational Medicine · 2025-07-31

## TL;DR

This study finds that hepatitis B virus integration in pancreatic cancer cells affects the KMT2B gene, promoting cancer growth through the PI3K/Akt pathway.

## Contribution

KMT2B is identified as a novel cancer-related gene in pancreatic cancer due to HBV integration and its role in activating the PI3K/Akt pathway.

## Key findings

- HBV integration occurs in about one-third of HBV DNA-positive pancreatic cancer tissues.
- KMT2B is frequently targeted by HBV integration and is upregulated in pancreatic cancer.
- KMT2B promotes cancer progression by regulating FYN through histone H3K4 trimethylation and activating the PI3K/Akt pathway.

## Abstract

Pancreatic ductal adenocarcinoma (PDAC) is a highly aggressive malignancy with few well‐established risk factors. Emerging epidemiological evidence suggests a link between hepatitis B virus (HBV) infection and PDAC. However, the underlying mechanisms remain unclear.

High‐throughput sequencing‐based approach was employed to identify HBV integrations in tumour and para‐tumour tissues of PDAC. The biological functions of KMT2B were evaluated in PDAC cell lines as well as in subcutaneous and orthotopic mouse models of PDAC. Chromatin immunoprecipitation sequencing and RNA sequencing were used to identify the pathway involved in PDAC development.

HBV integration was detected in approximately one‐third of HBV DNA‐positive PDAC and adjacent para‐tumour tissues. A total of 425 viral‒host junctions were identified, with the majority located in intergenic regions (51.29%), followed by introns (43.29%) and exons (2.35%) of the human genome. Lysine methyltransferase 2B (KMT2B, also known as MLL4), a gene frequently targeted by HBV integration in hepatocellular carcinoma, was also found to be interrupted by HBV in PDAC. KMT2B was significantly upregulated in PDAC and promoted malignant behaviours both in vitro and in vivo. Mechanistically, KMT2B exerts its oncogenic effects by regulating the downstream target gene FYN through histone H3K4 trimethylation, leading to the activation of the PI3K/Akt signalling pathway.

HBV integration is a common event in HBV‐related PDAC and KMT2B has been identified as a novel PDAC‐related gene.

Hepatitis B virus (HBV) integrates in both tumour and adjacent para‐tumour tissues of pancreatic ductal adenocarcinoma (PDAC).
KMT2B, a target gene of HBV integration, promotes PDAC proliferation and metastasis in vivo and in vitro experiments.KMT2B exerts its oncogenic effects by regulating the downstream target gene FYN via histone H3K4 trimethylation, activating the PI3K/Akt signalling pathway.

Hepatitis B virus (HBV) integrates in both tumour and adjacent para‐tumour tissues of pancreatic ductal adenocarcinoma (PDAC).

KMT2B, a target gene of HBV integration, promotes PDAC proliferation and metastasis in vivo and in vitro experiments.

KMT2B exerts its oncogenic effects by regulating the downstream target gene FYN via histone H3K4 trimethylation, activating the PI3K/Akt signalling pathway.

HBV DNA integrates in multiple genes including KMT2B in pancreatic cancer. KMT2B upregulation caused by HBV integration or other mechanisms promotes FYN expression via histone H3K4 trimethylation at its promoter region. Increased FYN expression activates the PI3K/Akt signalling pathway, thus driving PDAC cell proliferation, migration and invasion.

## Linked entities

- **Genes:** KMT2B (lysine methyltransferase 2B) [NCBI Gene 9757], FYN (FYN proto-oncogene, Src family tyrosine kinase) [NCBI Gene 2534]
- **Diseases:** pancreatic ductal adenocarcinoma (MONDO:0005184)

## Full-text entities

- **Genes:** RARB (retinoic acid receptor beta) [NCBI Gene 5915] {aka HAP, MCOPS12, NR1B2, RARbeta, RARbeta1, RRB2}, QSER1 (glutamine and serine rich 1) [NCBI Gene 79832], Mmp13 (matrix metallopeptidase 13) [NCBI Gene 17386] {aka Clg, MMP-13, Mmp1}, ATP2A1 (ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1) [NCBI Gene 487] {aka ATP2A, SERCA1}, CCND1 (cyclin D1) [NCBI Gene 595] {aka BCL1, D11S287E, PRAD1, U21B31}, MAP3K8 (mitogen-activated protein kinase kinase kinase 8) [NCBI Gene 1326] {aka AURA2, COT, EST, ESTF, MEKK8, TPL2}, KRTAP10-9 (keratin associated protein 10-9) [NCBI Gene 386676] {aka KAP10.9, KAP18.9, KRTAP18-9}, HELQ (helicase, POLQ like) [NCBI Gene 113510] {aka HEL308}, MMP1 (matrix metallopeptidase 1) [NCBI Gene 4312] {aka CLG}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, CCNA2 (cyclin A2) [NCBI Gene 890] {aka CCN1, CCNA}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, SLC25A51 (solute carrier family 25 member 51) [NCBI Gene 92014] {aka CG7943, MCART1}, SLC22A11 (solute carrier family 22 member 11) [NCBI Gene 55867] {aka OAT4, hOAT4}, KMT2B (lysine methyltransferase 2B) [NCBI Gene 9757] {aka CXXC10, DYT28, HRX2, MLL1B, MLL2, MLL4}, Mki67 (antigen identified by monoclonal antibody Ki 67) [NCBI Gene 17345] {aka D630048A14Rik, Ki-67, Ki67}, TXK (TXK tyrosine kinase) [NCBI Gene 7294] {aka BTKL, PSCTK5, PTK4, RLK, TKL}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, KSR2 (kinase suppressor of ras 2) [NCBI Gene 283455], Kmt2b (lysine (K)-specific methyltransferase 2B) [NCBI Gene 75410] {aka 2610014H22Rik, Mll2, Wbp7, mKIAA0304}, KCNJ16 (potassium inwardly rectifying channel subfamily J member 16) [NCBI Gene 3773] {aka BIR9, HKTD, KIR5.1}, RNA5-8SN5 (RNA, 5.8S ribosomal N5) [NCBI Gene 100008587] {aka RN5-8S1, RNA5-8S5}, TASP1 (taspase 1) [NCBI Gene 55617] {aka C20orf13, SULEHS, dJ585I14.2}, MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, Akt1 (Akt serine/threonine kinase 1) [NCBI Gene 11651] {aka Akt, LTR-akt, PKB, PKB/Akt, PKBalpha, Rac}, PRMT5-AS1 (PRMT5 antisense RNA 1) [NCBI Gene 100505758], MAPK8 (mitogen-activated protein kinase 8) [NCBI Gene 5599] {aka JNK, JNK-46, JNK1, JNK1A2, JNK21B1/2, PRKM8}, MYL4 (myosin light chain 4) [NCBI Gene 4635] {aka ALC1, AMLC, GT1, PRO1957}, MAP3K10 (mitogen-activated protein kinase kinase kinase 10) [NCBI Gene 4294] {aka MEKK10, MLK2, MST}, TERT (telomerase reverse transcriptase) [NCBI Gene 7015] {aka CMM9, DKCA2, DKCB4, EST2, PFBMFT1, TCS1}, FYN (FYN proto-oncogene, Src family tyrosine kinase) [NCBI Gene 2534] {aka SLK, SYN, p59-FYN}, SRC (SRC proto-oncogene, non-receptor tyrosine kinase) [NCBI Gene 6714] {aka ASV, SRC1, THC6, c-SRC, p60-Src}, Vcl (vinculin) [NCBI Gene 22330] {aka 9430097D22}, Ccnd1 (cyclin D1) [NCBI Gene 12443] {aka CycD1, Cyl-1, PRAD1, bcl-1, cD1}, MAP2K7 (mitogen-activated protein kinase kinase 7) [NCBI Gene 5609] {aka JNKK2, MAPKK7, MEK, MEK 7, MKK7, PRKMK7}, MROH2A (maestro heat like repeat family member 2A) [NCBI Gene 339766] {aka HEATR7B1}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, ZHX2 (zinc fingers and homeoboxes 2) [NCBI Gene 22882] {aka AFR1, RAF}, VTN (vitronectin) [NCBI Gene 7448] {aka V75, VN, VNT}, PCDH10 (protocadherin 10) [NCBI Gene 57575] {aka OL-PCDH}, PNPT1 (polyribonucleotide nucleotidyltransferase 1) [NCBI Gene 87178] {aka COXPD13, DFNB70, OLD35, PNPASE, SCA25, old-35}, Fyn (Fyn proto-oncogene, Src family tyrosine kinase) [NCBI Gene 14360]
- **Diseases:** N (MESH:C536108), T (MESH:D001260), prostate cancer (MESH:D011471), Tumour (MESH:D009369), infection (MESH:D007239), HCC (MESH:D006528), PDAC (MESH:D021441), PDAC tumour (MESH:D010190), chronic pancreatitis (MESH:D050500), melanoma (MESH:D008545), para (MESH:D002277), liver damage (MESH:D056486), Liver metastases (MESH:D009362), NHL (MESH:D008228), HBV (MESH:D006509), carcinogenesis (MESH:D063646), breast cancer (MESH:D001943), colorectal cancer (MESH:D015179), type 2 diabetes (MESH:D003924), gastric cancer (MESH:D013274), iCCA (MESH:D018281), squamous cell carcinoma (MESH:D002294), obesity (MESH:D009765), chronic hepatitis (MESH:D006521), cervical cancer (MESH:D002583), glioblastoma (MESH:D005909)
- **Chemicals:** nitrogen (MESH:D009584), CO2 (MESH:D002245), H&amp;E (MESH:D006371), glycine (MESH:D005998), eosin (MESH:D004801), glucose (MESH:D005947), 5'-methylthioadenosine (MESH:C008500), formaldehyde (MESH:D005557), DMEM (-), crystal violet (MESH:D005840), LY294002 (MESH:C085911), Lipofectamine 2000 (MESH:C086724), TRIzol (MESH:C411644), Haematoxylin (MESH:D006416)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Nicotiana tabacum (American tobacco, species) [taxon 4097], Homo sapiens (human, species) [taxon 9606], Hepatitis B virus (no rank) [taxon 10407]
- **Cell lines:** PANC-1-VC — Mus musculus (Mouse), Hybridoma (CVCL_C2X3), BxPC-3 — Homo sapiens (Human), Pancreatic ductal adenocarcinoma, Cancer cell line (CVCL_0186), PANC-1 — Homo sapiens (Human), Pancreatic ductal adenocarcinoma, Cancer cell line (CVCL_0480), VC — Homo sapiens (Human), Plasma cell myeloma, Cancer cell line (CVCL_M545), hTERT-HPNE — Homo sapiens (Human), Telomerase immortalized cell line (CVCL_C466), AsPC-1 — Homo sapiens (Human), Pancreatic ductal adenocarcinoma, Cancer cell line (CVCL_0152), BALB/c — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0184), CFPAC-1 — Homo sapiens (Human), Cystic fibrosis, Cancer cell line (CVCL_1119)

## Full text

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## Figures

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## References

56 references — full list in the complete paper: https://tomesphere.com/paper/PMC12311841/full.md

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Source: https://tomesphere.com/paper/PMC12311841