# Molecular Aspects of Rare Coagulation Factor Deficiencies

**Authors:** Hajar Tourbih, Asma Harrach, Hanaa Bencharef, Hind Dehbi, Bouchra Oukkache

PMC · DOI: 10.7759/cureus.89102 · Cureus · 2025-07-31

## TL;DR

This paper explores the genetic and molecular causes of rare blood clotting disorders and how modern techniques improve diagnosis and treatment.

## Contribution

The paper highlights the use of modern molecular tools to better understand and diagnose rare coagulation factor deficiencies.

## Key findings

- Molecular analysis identifies various mutations affecting coagulation factors, including missense, nonsense, and splicing mutations.
- Genetic characterization improves diagnostic accuracy and informs clinical management strategies.
- Different mutation types have distinct impacts on bleeding symptoms and factor production.

## Abstract

Rare coagulation factor deficiencies are inherited disorders affecting factors I, II, V, VII, X, XI, XIII, and combined forms. They mainly present with bleeding symptoms of variable severity. These deficiencies show significant clinical heterogeneity, with no consistent correlation between factor levels and bleeding intensity. Prevalence is higher in populations with high consanguinity rates. Understanding relies on the study of genetic and molecular mechanisms.

Diagnosis is based on hemostasis testing, including prothrombin time (PT), activated partial thromboplastin time (aPTT), and factor activity assays. In case of abnormalities, Molecular analysis is undertaken using genomic DNA extracted from peripheral blood samples. Depending on the clinical context and the level of detail required, sequencing is performed using either Sanger sequencing or next-generation sequencing (NGS) platforms, enabling the identification of pathogenic variants responsible for the coagulation disorder. Variant interpretation follows American College of Medical Genetics and Genomics (ACMG)/Association for Molecular Pathology (AMP) guidelines. Large deletions or duplications are assessed via Multiplex Ligation-dependent Probe Amplification (MLPA) or Copy number variations (CNV) analysis.

Molecular analysis revealed a wide range of mutations depending on the deficient factor. Missense mutations are the most common, followed by nonsense, splicing, and insertion/deletion mutations. Some mutations prevent factor production, while others alter its structure or secretion. Each mutation type has a distinct impact on the bleeding phenotype. Genetic characterization improves diagnostic accuracy and guides clinical management. Modern molecular tools have enhanced the understanding of these disorders’ pathophysiology. A multidisciplinary approach is essential for optimal patient care. Ongoing research is key to developing targeted therapies.

## Full-text entities

- **Genes:** PC (pyruvate carboxylase) [NCBI Gene 5091] {aka PCB}, F9 (coagulation factor IX) [NCBI Gene 2158] {aka F9 p22, FIX, HEMB, P19, PTC, THPH8}, F2 (coagulation factor II, thrombin) [NCBI Gene 2147] {aka PT, RPRGL2, THPH1}, VKORC1 (vitamin K epoxide reductase complex subunit 1) [NCBI Gene 79001] {aka EDTP308, MST134, MST576, VKCFD2, VKOR}, PROC (protein C, inactivator of coagulation factors Va and VIIIa) [NCBI Gene 5624] {aka APC, PC, PROC1, THPH3, THPH4}, FGG (fibrinogen gamma chain) [NCBI Gene 2266], F5 (coagulation factor V) [NCBI Gene 2153] {aka FVL, PCCF, RPRGL1, THPH2, fV}, F11 (coagulation factor XI) [NCBI Gene 2160] {aka FXI, PTA}, LMAN1 (lectin, mannose binding 1) [NCBI Gene 3998] {aka ERGIC-53, ERGIC53, F5F8D, FMFD1, MCFD1, MR60}, FGB (fibrinogen beta chain) [NCBI Gene 2244] {aka HEL-S-78p}, FGA (fibrinogen alpha chain) [NCBI Gene 2243] {aka AMYLD2, Fib2}, F7 (coagulation factor VII) [NCBI Gene 2155] {aka SPCA}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, F13A1 (coagulation factor XIII A chain) [NCBI Gene 2162] {aka F13A}, F10 (coagulation factor X) [NCBI Gene 2159] {aka FX, FXA}, GLA (galactosidase alpha) [NCBI Gene 2717] {aka GALA}, CPB2 (carboxypeptidase B2) [NCBI Gene 1361] {aka CPU, PCPB, TAFI}, F8 (coagulation factor VIII) [NCBI Gene 2157] {aka AHF, DXS1253E, F8B, F8C, FVIII, HEMA}, GGCX (gamma-glutamyl carboxylase) [NCBI Gene 2677] {aka VKCFD1, VKGC}, MCFD2 (multiple coagulation factor deficiency 2, ER cargo receptor complex subunit) [NCBI Gene 90411] {aka F5F8D, F5F8D2, LMAN1IP, SDNSF}, F13B (coagulation factor XIII B chain) [NCBI Gene 2165] {aka FXIIIB}
- **Diseases:** CRM-like disease (MESH:C537675), developmental, skeletal, and dermatological abnormalities (MESH:D000168), aPTT (MESH:C000719197), hemarthroses (MESH:D006395), Congenital deficiencies (MESH:D007153), PT (MESH:D007020), Congenital factor V deficiency (MESH:D005166), Afibrinogenemia (MESH:D000347), Hemophilia (MESH:D006467), autosomal recessive disorder (MESH:D030342), Hypodysfibrinogenemia (MESH:C565970), bleeding tendency (MESH:C536965), RBDD (MESH:D035583), hypo-fibrinogenemia (MESH:D052456), PXE-like syndrome (MESH:D011561), VKCFD (MESH:C564741), Clotting Factor Deficiency (MESH:C564885), Menorrhagia (MESH:D008595), miscarriage (MESH:D000022), myocardial infarction (MESH:D009203), Thrombosis and Haemostasis (MESH:D020141), hematomas (MESH:D006406), Factor XI deficiency (MESH:D005173), plasma deficiency (MESH:D054219), PXE-like disorder (MESH:C563654), intracerebral hemorrhages (MESH:D002543), deficiency of vitamin K-dependent procoagulant proteins (MESH:D014813), FVII deficiency (MESH:D005168), vascular injuries (MESH:D057772), trauma (MESH:D014947), genetic anomaly (MESH:D020022), coagulation (MESH:D001778), Quantitative deficiency (OMIM:604595), Dysfibrinogenemia (MESH:C562727), Type I deficiency (MESH:D006969), dysprothrombinemia (MESH:C562724), FXIII deficiency (MESH:D005177), dependent (MESH:D019966), Coagulation Factor Deficiencies (MESH:D020147), infectious disease (MESH:D003141), type I FX deficiency (MESH:C572568), Hereditary vitamin K-dependent coagulation factor deficiency (MESH:D025861), ischemic stroke (MESH:D002544), AD (MESH:D000544), thrombosis (MESH:D013927), thromboembolic (MESH:D013923), hereditary disorder (MESH:D009386), Combined Factor V and Factor VIII Deficiency (MESH:C565577), venous thromboembolism (MESH:D054556), Factor X deficiency (MESH:D005171), umbilical hemorrhage (MESH:D014496), combined clotting factor deficiency (OMIM:607473), Bleeding (MESH:D006470)
- **Chemicals:** warfarin (MESH:D014859), Histidine (MESH:D006639), Thymine (MESH:D013941), Adenine (MESH:D000225), Vitamin K (MESH:D014812), Guanine (MESH:D006147), ammonia (MESH:D000641), amine (MESH:D000588), Cysteine (MESH:D003545), EDTA (MESH:D004492), Cytosine (MESH:D003596)
- **Species:** Bos taurus (bovine, species) [taxon 9913], Oryctolagus cuniculus (domestic rabbit, species) [taxon 9986], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** R275H, Val20Ala, c.510+1G -> T, p.Ala405Thr, Gly435 to Ser, Cys398Tyr, Glu117X, Ala221Val, c. 104G -> A, Cys527Tyr, Gly204Arg, c.2T>C, p.Arg139Gln, Pro132Arg, Val34Leu, p.Arg364Trp, c.89-90insG, Tyr427Cys, arginine is substituted by cysteine, Trp596Ser, 292C > T, Ser225Phe, Cys58Tyr, G269C, R16H, c. 901C -> T, c.1149+2T>G, R301H, Phe283Leu, Ala91Thr, c.1952+144 C>G, Pro564Leu, c. 103C -> T, Gly400Val, Leu564, Glu297Lys, His95Arg, Gly244 to Arg, Cys90Ser, p.Arg364Gln, p.Arg337His

## Full text

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## References

60 references — full list in the complete paper: https://tomesphere.com/paper/PMC12311556/full.md

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Source: https://tomesphere.com/paper/PMC12311556