# Adjuvant combination and antigen multimerization shape neutralizing antibody and T cell responses to a SARS-CoV-2 RBD subunit vaccine

**Authors:** João Pedro da Silva Nunes, Mariângela de Oliveira Silva, Juliana de Souza Apostolico, Isabela Pazotti Daher, Rodolfo Ferreira Marques, Marcio Massao Yamamoto, Alexia Adrianne Venceslau Brito Carvalho, Maria Fernanda de Castro-Amarante, Edison Luiz Durigon, Carsten Wrenger, Luiz Mario Ramos Janini, Edmarcia Elisa de Souza, Robert Andreata-Santos, Juliana Terzi Maricato, Edecio Cunha-Neto, Jorge Kalil, Silvia Beatriz Boscardin, Daniela Santoro Rosa

PMC · DOI: 10.3389/fimmu.2025.1610422 · Frontiers in Immunology · 2025-07-17

## TL;DR

This study explores how combining different vaccine components can improve immune responses to a SARS-CoV-2 vaccine based on the RBD protein.

## Contribution

The study introduces a novel RBD vaccine formulation combining multimerization and adjuvant synergy to enhance both antibody and T cell immunity.

## Key findings

- RBD dimer and trimer formulations with AddaS03 adjuvant improved humoral responses and broad neutralization.
- Combining AddaS03 and Poly I:C adjuvants synergistically boosted antibody affinity and Th1-skewed T cell responses.
- Specific RBD peptides activated CD4 and CD8 T cells, with peptide 12 being the dominant CD4 epitope.

## Abstract

The rapid development and deployment of multiple safe and effective COVID-19 vaccines were critical cornerstones of pandemic control. However, vaccine inequity and the emergence of new variants of concern (VOCs) highlighted major gaps in the global strategy to control SARS-CoV-2 infection. Despite the use of distinct platforms, most approved vaccines utilize the Spike protein as the main antigen due to its pivotal role in virus entry, mediated by the receptor binding domain (RBD). In this context, RBD stands out as a promising antigen for a subunit vaccine candidate, as it is the main target of neutralizing antibodies, has a well-established scalable production pipeline, and has proven safety. Approaches to enhance RBD immunogenicity encompass the addition of adjuvants and antigen multimerization.

In this study, we compared the immunogenic properties of the Wuhan RBD monomer and homodimer with an RBD heterotrimer formulation composed of the Delta, Beta and Gamma variants. We also screened different adjuvants to optimize both humoral and cellular immunity.

Our results showed that immunization with the RBD dimer and trimer, in the presence of the adjuvant AddaS03, elicited a higher humoral response and a broader neutralization profile. Additionally, RBD-trimer immunization more efficiently inhibited viral replication in the lungs of mice challenged with the ancestral Wuhan strain compared to the monomer. We further optimized our vaccine formulation by combining the adjuvants AddaS03 and Poly I:C, which demonstrated a synergistic effect, integrating the potent humoral response induced by AddaS03 with the cellular Th1 skewing capacity of Poly I:C. The AddaS03+ Poly I:C mixture induced antibodies with higher affinity and an increased frequency of RBD-specific IgG2c-producing bone marrow plasma cells, highlighting the potential of this adjuvant combination to generate long-lived memory plasma cells. Additionally, we identified sequences within the RBD that induced specific IFNγ T cell responses. Peptide 12 (393-TNVYADSFVIRGDEVRQ-409) emerged as the immunodominant CD4 T cell epitope, whereas peptides 28 (505-YQPYRVVVLSFELLHAP-521) and 29 (512-VLSFELLHAPATVCGPK-528) successfully activated CD8 T cells.

These findings underscore that antigen multimerization and the strategic combination of adjuvants can significantly improve vaccine immunogenicity.

## Linked entities

- **Proteins:** CHMP5 (charged multivesicular body protein 5), l(3)62Bi (lethal (3) 62Bi)
- **Chemicals:** Poly I:C (PubChem CID 135618150)
- **Diseases:** SARS-CoV-2 (MONDO:0100096), COVID-19 (MONDO:0100096)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, TLR4 (toll like receptor 4) [NCBI Gene 7099] {aka ARMD10, CD284, TLR-4, TOLL}, Aicda (activation-induced cytidine deaminase) [NCBI Gene 11628] {aka Aid, Arp2}, Il2 (interleukin 2) [NCBI Gene 16183] {aka Il-2}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, ERN1 (endoplasmic reticulum to nucleus signaling 1) [NCBI Gene 2081] {aka IRE1, IRE1P, IRE1a, hIRE1p}, Tlr3 (toll-like receptor 3) [NCBI Gene 142980], Tlr9 (toll-like receptor 9) [NCBI Gene 81897], IGHE (immunoglobulin heavy constant epsilon) [NCBI Gene 3497] {aka IgE}, Cd3e (CD3 antigen, epsilon polypeptide) [NCBI Gene 12501] {aka CD3, CD3epsilon, T3e}, Ighg2b (immunoglobulin heavy constant gamma 2B) [NCBI Gene 16016] {aka IgG2b, Igh-3, gamma2b}, Myd88 (myeloid differentiation primary response gene 88) [NCBI Gene 17874], Cd4 (CD4 antigen) [NCBI Gene 12504] {aka L3T4, Ly-4}, Ighg1 (immunoglobulin heavy constant gamma 1 (G1m marker)) [NCBI Gene 16017] {aka IgG1, Igh-4, VH7183}, H2-K1 (histocompatibility 2, K1, K region) [NCBI Gene 14972] {aka H-2K, H-2K(d), H2-D1, H2-K, K-f}, Nlrp3 (NLR family, pyrin domain containing 3) [NCBI Gene 216799] {aka AGTAVPRL, AII/AVP, Cias1, FCAS, FCU, MWS}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, Bcr (BCR activator of RhoGEF and GTPase) [NCBI Gene 110279] {aka 5133400C09Rik, mKIAA3017}, Krt18 (keratin 18) [NCBI Gene 16668] {aka CK18, K18, Krt1-18}, S (surface glycoprotein) [NCBI Gene 43740568] {aka spike glycoprotein}, Igh-V7183 (immunoglobulin heavy chain (V7183 family)) [NCBI Gene 16059] {aka B9-scFv, IgG, IgH, IgVH1(VSG), VH7183, VI24H}, E (envelope protein) [NCBI Gene 43740570]
- **Diseases:** influenza (MESH:D007251), COVID-19 (MESH:D000086382), herpes zoster (MESH:D006562), malaria (MESH:D008288), infection (MESH:D007239), infectious diseases (MESH:D003141), respiratory distress (MESH:D012128), ASC (MESH:D065309), death (MESH:D003643), Weight loss (MESH:D015431), virus infection (MESH:D014777), overdose (MESH:D062787)
- **Chemicals:** penicillin (MESH:D010406), Peptide (MESH:D010455), alpha-tocopherol (MESH:D024502), Tween 20 (MESH:D011136), ampicillin (MESH:D000667), potassium (MESH:D011188), hypoxanthine (MESH:D019271), saline (MESH:D012965), EDTA (MESH:D004492), biotin (MESH:D001710), L-glutamine (MESH:D005973), PMSF (-), ammonium- chloride (MESH:D000643), CpG ODN 1826 (MESH:C423449), citrate (MESH:D019343), hydrogen peroxide (MESH:D006861), ammonium thiocyanate (MESH:C026976), phenylmethylsulfonyl fluoride (MESH:D010664), 3-amino-9-ethylcarbazole (MESH:C020702), phosphate (MESH:D010710), PVDF (MESH:C024865), ethanol (MESH:D000431), AddaVax (MESH:C000590912), Trypan blue (MESH:D014343), H2SO4 (MESH:C033158), xylazine (MESH:D014991), polyethylene glycol (MESH:D011092), 8-Azaguanine (MESH:D001375), CpG ODN (MESH:C408982), DMSO (MESH:D004121), water (MESH:D014867), AS03 (MESH:C550253), blasticidin (MESH:C004500), CO2 (MESH:D002245), Amino acids (MESH:D000596), isoflurane (MESH:D007530), imidazole (MESH:C029899), streptomycin (MESH:D013307), Alum (MESH:C041524), Ni (MESH:D009532), o-phenylenediamine (MESH:C034193), MF59 (MESH:C089950), lipid (MESH:D008055), agarose (MESH:D012685), SDS (MESH:D012967), 2-mercaptoethanol (MESH:D008623), thymidine (MESH:D013936), CpG (MESH:C015772), oil (MESH:D009821), Alhydrogel (MESH:D000536), aminopterin (MESH:D000630), aluminum (MESH:D000535), NTA (MESH:D009571), squalene (MESH:D013185), Poly (I:C) (MESH:D011070), BA.1 (MESH:C006646)
- **Species:** H1N1 subtype (serotype) [taxon 114727], Human papillomavirus (species) [taxon 10566], Homo sapiens (human, species) [taxon 9606], Escherichia coli (E. coli, species) [taxon 562], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Mus musculus (house mouse, species) [taxon 10090], Pseudovirus (genus) [taxon 186672], Enterovirus C (no rank) [taxon 138950]
- **Cell lines:** HEK293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), HT1080 — Homo sapiens (Human), Fibrosarcoma, Cancer cell line (CVCL_0317), Expi293 — Homo sapiens (Human), Transformed cell line (CVCL_D615), hACE2 — Homo sapiens (Human), Transformed cell line (CVCL_C1G1), 293 — Homo sapiens (Human), Transformed cell line (CVCL_0045), P3X66Ag8.653 — Mus musculus (Mouse), Mouse multiple myeloma, Cancer cell line (CVCL_4032), pSARS-CoV-2 — Homo sapiens (Human), High grade ovarian serous adenocarcinoma, Cancer cell line (CVCL_2420), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU), /6 — Homo sapiens (Human), Tongue squamous cell carcinoma, Cancer cell line (CVCL_5985), ATCC CCL-81 — Homo sapiens (Human), Neoplasm, Cancer cell line (CVCL_M024), Vero — Chlorocebus sabaeus (Green monkey), Spontaneously immortalized cell line (CVCL_0059), -1 — Mus musculus (Mouse), Hybridoma (CVCL_C7RB)

## Full text

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## Figures

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## References

75 references — full list in the complete paper: https://tomesphere.com/paper/PMC12310705/full.md

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Source: https://tomesphere.com/paper/PMC12310705