# Uncovering the molecular mechanisms of Qingdu Zengye Decoction in the treatment of nasopharyngeal carcinoma: an integrative investigation

**Authors:** Qi Quan, Zeyu Liu, Ran Ding, Yongmiao Lin, Sihe Zhang, Wei Luo, Mengjie Lei, Teng Fan, Xin Su, Yuanyuan Huang, Roujun Peng, Bei Zhang

PMC · DOI: 10.3389/fphar.2025.1648294 · Frontiers in Pharmacology · 2025-07-17

## TL;DR

This study explores how Qingdu Zengye Decoction fights nasopharyngeal cancer by targeting multiple pathways and the tumor environment.

## Contribution

The study reveals QZD's multi-target mechanisms in NPC treatment through integrative computational and experimental approaches.

## Key findings

- QZD induces apoptosis and inhibits the PI3K-Akt pathway in NPC cells.
- QZD compounds like quercetin and luteolin strongly interact with key targets like AKT1 and MTOR.
- Single-cell RNA sequencing shows QZD modulates tumor and immune compartments in NPC.

## Abstract

Nasopharyngeal carcinoma (NPC) remains a therapeutic challenge due to its aggressive nature and limited treatment efficacy. Traditional Chinese Medicine, particularly Qingdu Zengye Decoction (QZD), has shown clinical potential, but its mechanistic basis in NPC treatment requires elucidation.

This study aims to elucidate the mechanisms of action of QZD in the treatment of NPC, focusing on its multi-target regulatory effects on cell apoptosis, oncogenic signaling pathways, and tumor immune microenvironment.

An integrative approach combining computational pharmacology, functional experiments, and single-cell transcriptomic profiling was employed to dissect QZD’s anti-NPC mechanisms. Network pharmacology and protein-protein interaction (PPI) analysis was used to identify potential QZD targets. Functional assays (cell proliferation, apoptosis, colony formation) and Western blotting were used to validate key pathways. Molecular docking was applied to assessed ligand-target binding affinities. Single-cell RNA sequencing (scRNA-seq) was used to analyzed spatial expression patterns in NPC tumor samples.

QZD suppressed tumor progression by inducing apoptosis through modulating Bax in a dose-dependent manner and inhibiting the PI3K-Akt signaling pathway. Network pharmacology analysis identified AKT1, MTOR, HIF1A, SRC, and ESR1 as core regulatory genes. scRNA-seq revealed compartment-specific target localization: AKT1/ESR1 in tumor cells, SRC/IL6 in myeloid cells, and MTOR/HIF1A across stromal compartments. Molecular docking confirmed strong interactions between QZD compounds (e.g., quercetin, luteolin) and these targets. Upregulation of IL6 was observed and its dual immune-modulatory effects involving tumor suppression and microenvironment reprogramming was suggested.

QZD exerts anti-tumor effects in NPC through apoptosis induction, PI3K-Akt pathway suppression, and multi-compartmental tumor microenvironment modulation. Its ability to concurrently target oncogenic signaling and immune regulation positions QZD as a promising therapeutic strategy for advanced NPC.

## Linked entities

- **Genes:** BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581], AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207], MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475], HIF1A (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 3091], SRC (SRC proto-oncogene, non-receptor tyrosine kinase) [NCBI Gene 6714], ESR1 (estrogen receptor 1) [NCBI Gene 2099]
- **Chemicals:** quercetin (PubChem CID 5280343), luteolin (PubChem CID 5280445)
- **Diseases:** nasopharyngeal carcinoma (MONDO:0015459), NPC (MONDO:0011775)

## Full-text entities

- **Genes:** POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, FBXW2 (F-box and WD repeat domain containing 2) [NCBI Gene 26190] {aka FBW2, Fwd2, Md6}, CD3D (CD3 delta subunit of T-cell receptor complex) [NCBI Gene 915] {aka CD3-DELTA, CD3DELTA, IMD19, T3D}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, HIF1A (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 3091] {aka HIF-1-alpha, HIF-1A, HIF-1alpha, HIF1, HIF1-ALPHA, MOP1}, ESR1 (estrogen receptor 1) [NCBI Gene 2099] {aka ER, ESR, ESRA, ESTRR, Era, NR3A1}, CLEC4D (C-type lectin domain family 4 member D) [NCBI Gene 338339] {aka CD368, CLEC-6, CLEC6, CLECSF8, Dectin-3, MCL}, CD14 (CD14 molecule) [NCBI Gene 929], PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, SPSB2 (splA/ryanodine receptor domain and SOCS box containing 2) [NCBI Gene 84727] {aka GRCC9, SSB2}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, LYZ (lysozyme) [NCBI Gene 4069] {aka AMYLD5, LYZF1, LZM}, BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581] {aka BCL2L4}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, PTK2B (protein tyrosine kinase 2 beta) [NCBI Gene 2185] {aka CADTK, CAKB, FADK2, FAK2, PKB, PTK}, SRC (SRC proto-oncogene, non-receptor tyrosine kinase) [NCBI Gene 6714] {aka ASV, SRC1, THC6, c-SRC, p60-Src}, SDHAF2 (succinate dehydrogenase complex assembly factor 2) [NCBI Gene 54949] {aka C11orf79, PGL2, PPGL2, SDH5, hSDH5}, COL1A1 (collagen type I alpha 1 chain) [NCBI Gene 1277] {aka CAFYD, EDSARTH1, EDSC, OI1, OI2, OI3}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, ACTA2 (actin alpha 2, smooth muscle) [NCBI Gene 59] {aka ACTSA, SMDYS}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, RAP1A (RAP1A, member of RAS oncogene family) [NCBI Gene 5906] {aka C21KG, G-22K, KREV-1, KREV1, RAP1, SMGP21}, CCR7 (C-C motif chemokine receptor 7) [NCBI Gene 1236] {aka BLR2, CC-CKR-7, CCR-7, CD197, CDw197, CMKBR7}, CLEC9A (C-type lectin domain containing 9A) [NCBI Gene 283420] {aka CD370, DNGR-1, DNGR1, UNQ9341}, CD74 (CD74 molecule) [NCBI Gene 972] {aka CLIP, DHLAG, HLADG, II, Ia-GAMMA, p33}, CD163 (CD163 molecule) [NCBI Gene 9332] {aka M130, MM130, SCARI1}, NKG7 (natural killer cell granule protein 7) [NCBI Gene 4818] {aka GIG1, GMP-17, p15-TIA-1}, CD68 (CD68 molecule) [NCBI Gene 968] {aka GP110, LAMP4, SCARD1}, LEF1 (lymphoid enhancer binding factor 1) [NCBI Gene 51176] {aka ECTD1, ECTD17, LEF-1, TCF10, TCF1ALPHA, TCF7L3}, CD79A (CD79a molecule) [NCBI Gene 973] {aka IGA, IGAlpha, MB-1, MB1}, CD3E (CD3 epsilon subunit of T-cell receptor complex) [NCBI Gene 916] {aka CD3epsilon, IMD18, T3E, TCRE}, CD1C (CD1c molecule) [NCBI Gene 911] {aka BDCA1, CD1, R7}, TAGLN (transgelin) [NCBI Gene 6876] {aka SM22, SM22-alpha, SMCC, TAGLN1, TGLN, WS3-10}, MS4A1 (membrane spanning 4-domains A1) [NCBI Gene 931] {aka B1, Bp35, CD20, CVID5, FMC7, LEU-16}
- **Diseases:** Qi and Yin deficiency (MESH:D016710), EBV (MESH:D020031), tumorigenic (MESH:D002471), RPMI (MESH:D013341), UMIs (MESH:C566733), atherosclerosis (MESH:D050197), hypoxia (MESH:D000860), NPC (MESH:D000077274), metastasis (MESH:D009362), hand-foot syndrome (MESH:D060831), death (MESH:D003643), Prostate cancer (MESH:D011471), UMAP (MESH:C567162), Tumor (MESH:D009369), inflammation (MESH:D007249), infection (MESH:D007239)
- **Chemicals:** Trypan blue (MESH:D014343), hematoxylin (MESH:D006416), TRIzol (MESH:C411644), 2-propanol (MESH:D019840), Palmatine (MESH:C005413), paraffin (MESH:D010232), PVDF (MESH:C024865), CELLBANKER (-), polystyrene (MESH:D011137), hydrochloric acid (MESH:D006851), crystal violet (MESH:D005840), Nobiletin (MESH:C008661), acetonitrile (MESH:C032159), Calcium (MESH:D002118), sodium chloride (MESH:D012965), ACN (MESH:C084683), methanol (MESH:D000432), Cisplatin (MESH:D002945), Gemcitabine (MESH:D000093542), capecitabine (MESH:D000069287), chromium (MESH:D002857), SDS (MESH:D012967), Hinokiflavone (MESH:C060299), Apigenin (MESH:D047310), quercetin (MESH:D011794), Amentoflavone (MESH:C011164), beta-sitosterol (MESH:C025473), luteolin (MESH:D047311), fluorouracil (MESH:D005472), H2O (MESH:D014867), acetic acid (MESH:D019342)
- **Species:** Ophiopogon japonicus (species) [taxon 100506], Rehmannia glutinosa (Chinese foxglove, species) [taxon 99300], Homo sapiens (human, species) [taxon 9606], Scrophularia ningpoensis (xuan shen, species) [taxon 291326], Selaginella doederleinii (species) [taxon 186426], Pseudostellaria heterophylla (hai er shen, species) [taxon 418402]
- **Cell lines:** HONE-1 — Homo sapiens (Human), Nasopharyngeal carcinoma, Cancer cell line (CVCL_8706)

## Full text

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## Figures

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## References

44 references — full list in the complete paper: https://tomesphere.com/paper/PMC12310586/full.md

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Source: https://tomesphere.com/paper/PMC12310586