# Case Report: A rare chromosomal imbalance with dup 7q36.3-qter and del 7pter-p22.3 arising from parental pericentric inversion

**Authors:** Rongbo Lin, Wenhui Zhang, Mingwei Huang, Yansheng Shen, Jianxiang Liao, Ping Song, Ying Qi, Jie He, Yuanxiang Xia, Jing Duan, Yuanzhen Ye, Qiuwei Yi, Pei Lan, Lingyu Kong, Zhanqi Hu

PMC · DOI: 10.3389/fgene.2025.1564711 · Frontiers in Genetics · 2025-07-17

## TL;DR

A rare chromosomal imbalance involving duplication and deletion on chromosome 7 is linked to developmental delays and facial abnormalities.

## Contribution

A new case of chromosome 7 imbalance is identified and analyzed, clarifying its genotype-phenotype correlation.

## Key findings

- The chromosomal imbalance includes duplication of 7q36.3-qter and deletion of 7pter-p22.3.
- Parental pericentric inversion is a likely cause of the duplication-deletion imbalance in the offspring.
- The condition is associated with progressive neurodevelopmental delay and mild facial dysmorphism.

## Abstract

Chromosomal abnormality is a significant cause of neurodevelopmental delay and congenital malformation. Only a few cases of chromosome 7 imbalances with both duplication of the distal long arm (7q) and deletion of the distal short arm (7p) have been reported without a systematic analysis of the genotype-phenotype relationship. We identify a new case of chromosome 7 imbalance with dup 7q36.3-qter and del 7pter-p22.3 and thoroughly characterize the chromosomal abnormality in the patient and related family members using a variety of genetic tests. More importantly, similar cases of 7q duplication and 7p deletion arising from parental pericentric inversion are reviewed to clarify the genotype-phenotype correlation of the disease. In summary, in cases of normal prenatal and early postnatal growth, progressive neurodevelopmental delay, intellectual disability, limited speech, and mild facial dysmorphism, the rare combination of duplication and deletion of distal ends of chromosome 7 may be suspected. Parental pericentric chromosomal inversion is likely a genetic contributor to the duplication-deletion imbalance in the offspring despite normal phenotypes in the inversion carrier, so genetic testing and counseling are recommended for better disease management and prevention.

## Linked entities

- **Diseases:** intellectual disability (MONDO:0001071)

## Full-text entities

- **Genes:** NUDT1 (nudix hydrolase 1) [NCBI Gene 4521] {aka MTH1}, MRM2 (mitochondrial rRNA methyltransferase 2) [NCBI Gene 29960] {aka FJH1, FTSJ2, HEL97, MTDPS17, RRMJ2}, COX19 (cytochrome c oxidase assembly factor COX19) [NCBI Gene 90639], PSMG3 (proteasome assembly chaperone 3) [NCBI Gene 84262] {aka C7orf48, PAC3, Pba3}, DNAAF5 (dynein axonemal assembly factor 5) [NCBI Gene 54919] {aka CILD18, HEATR2}, MICALL2 (MICAL like 2) [NCBI Gene 79778] {aka JRAB, MICAL-L2}, SNX8 (sorting nexin 8) [NCBI Gene 29886] {aka Mvp1}, SUN1 (Sad1 and UNC84 domain containing 1) [NCBI Gene 23353] {aka UNC84A}, TMEM184A (transmembrane protein 184A) [NCBI Gene 202915] {aka SDMG1, SLC51C1}, MAD1L1 (mitotic arrest deficient 1 like 1) [NCBI Gene 8379] {aka MAD1, MVA7, PIG9, TP53I9, TXBP181}, ZFAND2A (zinc finger AN1-type containing 2A) [NCBI Gene 90637] {aka AIRAP}, DNAJB6 (DnaJ heat shock protein family (Hsp40) member B6) [NCBI Gene 10049] {aka DJ4, DnaJ, HHDJ1, HSJ-2, HSJ2, LGMD1D}, RBM33 (RNA binding motif protein 33) [NCBI Gene 155435] {aka PRR8}, NCAPG2 (non-SMC condensin II complex subunit G2) [NCBI Gene 54892] {aka 3KS, CAP-G2, CAPG2, LUZP5, MTB, hCAP-G2}, MNX1 (motor neuron and pancreas homeobox 1) [NCBI Gene 3110] {aka HB9, HLXB9, HOXHB9, SCRA1}, GET4 (guided entry of tail-anchored proteins factor 4) [NCBI Gene 51608] {aka C7orf20, CDG2Y, CEE, CGI-20, TRC35}, HOXA13 (homeobox A13) [NCBI Gene 3209] {aka HOX1, HOX1J}, INTS1 (integrator complex subunit 1) [NCBI Gene 26173] {aka INT1, NDCAGF, NET28}, CYP2W1 (cytochrome P450 family 2 subfamily W member 1) [NCBI Gene 54905], SHH (sonic hedgehog signaling molecule) [NCBI Gene 6469] {aka HHG1, HLP3, HPE3, MCOPCB5, SMMCI, ShhNC}, PTPRN2 (protein tyrosine phosphatase receptor type N2) [NCBI Gene 5799] {aka IA-2beta, IAR, ICAAR, PTPRP, R-PTP-N2}, ELFN1 (extracellular leucine rich repeat and fibronectin type III domain containing 1) [NCBI Gene 392617] {aka DONDS, PPP1R28}, FAM20C (FAM20C golgi associated secretory pathway kinase) [NCBI Gene 56975] {aka DMP-4, DMP4, G-CK, GEF-CK, RNS}, GPER1 (G protein-coupled estrogen receptor 1) [NCBI Gene 2852] {aka CEPR, CMKRL2, DRY12, FEG-1, GPCR-Br, GPER}, VIPR2 (vasoactive intestinal peptide receptor 2) [NCBI Gene 7434] {aka C16DUPq36.3, DUP7q36.3, PACAP-R-3, PACAP-R3, VIP-R-2, VPAC2}, UBE3C (ubiquitin protein ligase E3C) [NCBI Gene 9690] {aka HECTH2, NDSMBA, NEDSMBA, RAUL}, CHLSN (cholesin) [NCBI Gene 84310] {aka C7orf50, YCR016W}, EN2 (engrailed homeobox 2) [NCBI Gene 2020], DYNC2I1 (dynein 2 intermediate chain 1) [NCBI Gene 55112] {aka CFAP163, DIC6, FAP163, SRPS6, SRTD8, WDR60}, ADAP1 (ArfGAP with dual PH domains 1) [NCBI Gene 11033] {aka CENTA1, GCS1L, p42IP4}, UNCX (UNC homeobox) [NCBI Gene 340260] {aka UNCX4.1}, NOM1 (nucleolar protein with MIF4G domain 1) [NCBI Gene 64434] {aka C7orf3, PPP1R113, SGD1}, ESYT2 (extended synaptotagmin 2) [NCBI Gene 57488] {aka CHR2SYT, E-Syt2, FAM62B}, PDGFA (platelet derived growth factor subunit A) [NCBI Gene 5154] {aka PDGF-A, PDGF1}, MAFK (MAF bZIP transcription factor K) [NCBI Gene 7975] {aka NFE2U, P18}, GPR146 (G protein-coupled receptor 146) [NCBI Gene 115330] {aka PGR8}, LMBR1 (limb development membrane protein 1) [NCBI Gene 64327] {aka ACHP, C7orf2, DIF14, PPD2, THYP, TPT}, RNF32 (ring finger protein 32) [NCBI Gene 140545] {aka FKSG33, HSD15, LMBR2}, PRKAR1B (protein kinase cAMP-dependent type I regulatory subunit beta) [NCBI Gene 5575] {aka MASNS, PRKAR1}, CNPY1 (canopy FGF signaling regulator 1) [NCBI Gene 285888]
- **Diseases:** aortic coarctation (MESH:D001017), pericardial effusion (MESH:D010490), atrial septal defect (MESH:D006344), neurodevelopment delay (MESH:D006968), seizure (MESH:D012640), Chromosomal abnormalities (MESH:D002869), growth retardation (MESH:D006130), hypogonadotrophic hypogonadism (MESH:D007006), genetic (MESH:D030342), stillbirth (MESH:D050497), CNV (MESH:D000092342), premature death (MESH:D003643), high-arched palate (MESH:D007569), scoliosis (MESH:D012600), hypotonia (MESH:D009123), facial dysmorphism (MESH:C565579), heart anomalies (MESH:D006330), intellectual disability (MESH:D008607), meningioma (MESH:D008579), OGM (MESH:D042822), hand-foot-genital syndrome (MESH:C535627), micrognathia (MESH:D008844), cerebellar hypoplasia (MESH:C562568), bradyarrhythmia (MESH:D001919), atrophy (MESH:D001284), ventricular septal defect (MESH:D006345), Marbach-Schaaf neurodevelopmental syndrome (MESH:C000726748), retinal degeneration (MESH:D012162), swallowing dysfunction (MESH:D003680), chronic pulmonary disease (MESH:D002908), congenital malformation (OMIM:163000), hydronephrosis (MESH:D006869), gastroesophageal reflux (MESH:D005764), cardiac anomalies (MESH:D006331), abnormalities in multiple body systems (MESH:D000015)
- **Chemicals:** sodium valproate (MESH:D014635), agarose (MESH:D012685), EDTA (MESH:D004492)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## References

16 references — full list in the complete paper: https://tomesphere.com/paper/PMC12310479/full.md

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Source: https://tomesphere.com/paper/PMC12310479