# MYTHOS: A Python Interface for Surface Crystal Structure Prediction of Organic Semiconductors

**Authors:** Emilio Lorini, Karsten Walzer, Martin Pfeiffer, Luca Muccioli

PMC · DOI: 10.1021/acs.jcim.5c00669 · Journal of Chemical Information and Modeling · 2025-07-09

## TL;DR

This paper introduces a Python tool for predicting how organic semiconductors form crystals on surfaces, which is important for improving electronic devices.

## Contribution

The paper presents a new Python-based method for predicting surface-induced polymorphs in organic semiconductors.

## Key findings

- The method successfully identified surface-induced polymorphs in six test cases.
- Predicted crystalline structures matched experimental results well.
- The approach allows for layer-by-layer analysis of crystal formation.

## Abstract

We introduce a new computational approach for predicting
organic
crystalline structures on flat surfaces, an essential step in designing
and optimizing thin-film systems for electronic devices. Based on
molecular mechanics and molecular dynamics simulations, and implemented
in a user-friendly Python program, this method enables a sequential
layer-by-layer analysis of crystalline formation, thus allowing to
identify surface-induced polymorphs (SIPs) and to study the transition
between surface and bulk structures. A validation against six diverse
test cases demonstrated a good match with experimental crystalline
parameters and arrangements, underscoring the reliability of the method
in identifying the most relevant polymorphs for a given molecule.

## Full-text entities

- **Genes:** PCSK1N (proprotein convertase subtilisin/kexin type 1 inhibitor) [NCBI Gene 27344] {aka BigLEN, PEN, PROSAAS, SAAS, SCG8, SgVIII}, PRF1 (perforin 1) [NCBI Gene 5551] {aka HPLH2, P1, PFP}
- **Diseases:** OSCs (MESH:D000092124)
- **Chemicals:** Graphite (MESH:D006108), nitrogen (MESH:D009584), Au (MESH:D006046), CSP (-), carbons (MESH:D002244), thiophene (MESH:D013876), B2 (MESH:C023970), sulfur (MESH:D013455), rubrene (MESH:C045049), hydrogen (MESH:D006859), Pentacene (MESH:C523499)
- **Cell lines:** S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), DCV-2 — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_A628), DCV-1 — Mus musculus (Mouse), Hybridoma (CVCL_C7RB)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12308790/full.md

## References

64 references — full list in the complete paper: https://tomesphere.com/paper/PMC12308790/full.md

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Source: https://tomesphere.com/paper/PMC12308790