# GC-IMS identification of early-warning biomarkers and fungal community dynamics during cigar tobacco mold process

**Authors:** Ge Zhang, Kuo Huang, Qiuxuan Xie, Qingchang Li, Dong Li, Changwen Ye, Chen He, Hongru Xi, Wei Ding, Qingyuan Hu

PMC · DOI: 10.3389/fmicb.2025.1595849 · Frontiers in Microbiology · 2025-07-16

## TL;DR

This study identifies early mold warning signs in cigar tobacco using chemical markers and tracks how fungi change during the mold process.

## Contribution

The study introduces new early-warning biomarkers for mold detection and reveals fungal-VOC interactions during tobacco molding.

## Key findings

- Four VOCs were identified as early-warning biomarkers for mold with significant increases in early stages.
- Fungal diversity dropped sharply after molding, with Aspergillus dominating and correlating with specific VOCs.

## Abstract

Mold-derived contamination in cigar tobacco leaves causes severe economic losses and health risks due to mycotoxin production. This study aimed to identify early-warning biomarkers for mold and elucidate their interaction with fungal communities.

Gas chromatography-ion mobility spectrometry (GC-IMS) combined with high-throughput sequencing was employed to profile volatile organic compounds (VOCs) and fungal communities during artificial molding.

A total of 72 VOCs were detected, with four compounds (2-methyl-1-butanol-M, 2-methyl-1-butanol-D, 2-propanone, and 1-penten-3-ol) identified as early-warning biomarkers through VIP > 1 and P < 0.05, showing 1.31.5-fold increases in early mold stages (MB3). Furthermore, fungal diversity sharply declined post-molding (OTUs reduced by 85.7%), with Aspergillus dominating (>99.45% abundance), and exhibiting strong positive correlations with 1-penten-3-ol (ρ = 0.61) and benzaldehyde-M (ρ = 0.67).

These findings provide actionable biomarkers for industrial mold prevention and insights into fungal-VOC interaction, with implications for perishable crop storage.

## Linked entities

- **Chemicals:** 2-propanone (PubChem CID 180), 1-penten-3-ol (PubChem CID 12020)
- **Species:** Aspergillus (taxon 5052)

## Full-text entities

- **Diseases:** fungal (MESH:D009181), infection (MESH:D007239)
- **Chemicals:** Ethanol (MESH:D000431), alcohols (MESH:D000438), 2-heptanone (MESH:C011917), methyl butyrate (MESH:C043811), 2-propanone (MESH:D000096), agarose (MESH:D012685), esters (MESH:D004952), 2-hexanone (MESH:D008742), 2-nonanone (MESH:C026636), thiophene (MESH:D013876), silicone (MESH:D012828), 1-octen-3-ol (MESH:C038844), 3H (MESH:D014316), ketones (MESH:D007659), 2-pentanone (MESH:C076402), VOC (MESH:D055549), 3-methyl-1-butanol (MESH:C029683), benzaldehyde (MESH:C032175), 2-butanone (MESH:C005222), 1-penten-3-ol (MESH:C068720), pentanal (MESH:C046012), cyclopentanone (MESH:C007201), aldehydes (MESH:D000447), dimethyl disulfide (MESH:C021181), 4-methoxybenzyl formate (MESH:C577738), 3-octanone (MESH:C017582), nitrogen (MESH:D009584), (Z)-3-hexenol (MESH:C051918), water (MESH:D014867), Pyrazines (MESH:D011719), terpene (MESH:D013729), amyl acetate (MESH:C005716), 3-phenyl-2-propen-1-ol (MESH:C020722), furans (MESH:D005663), 1-pentanol (MESH:C024999), organic compounds (MESH:D009930), 2-methyl-1-propanol (MESH:C040507), 2-octanone (MESH:C037075), 1-octene-3-alcohol (-), GC (MESH:C057580)
- **Species:** Arachis hypogaea (goober, species) [taxon 3818], Nicotiana tabacum (American tobacco, species) [taxon 4097], Oryza sativa (Asian cultivated rice, species) [taxon 4530], Pistacia vera (pistachio, species) [taxon 55513], Pseudocercospora (genus) [taxon 131324], Aspergillus (genus) [taxon 5052], A. flavus [taxon 315677], Alternaria sect. Alternaria (section) [taxon 2499237], Penicillium chrysogenum (species) [taxon 5076], Cladosporium (genus) [taxon 5498], Stagonosporopsis (genus) [taxon 749880], Aspergillus flavus (species) [taxon 5059], Fungi (kingdom) [taxon 4751]

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12307484/full.md

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12307484/full.md

## References

49 references — full list in the complete paper: https://tomesphere.com/paper/PMC12307484/full.md

---
Source: https://tomesphere.com/paper/PMC12307484