# Network analysis of master regulators associated with invasive phenotypes in multiple myeloma

**Authors:** Feng Qian, Yubo Wang, Qinghong Shi

PMC · DOI: 10.3389/fcell.2025.1586870 · Frontiers in Cell and Developmental Biology · 2025-07-16

## TL;DR

This study identifies key regulators linked to invasive behavior in multiple myeloma and highlights ERG as a potential therapeutic target.

## Contribution

The paper introduces a network-based approach to identify master regulators of invasiveness in multiple myeloma and validates ERG as a key player.

## Key findings

- ERG expression is elevated in extramedullary multiple myeloma and correlates with poor prognosis.
- ERG silencing reduces cell invasion and migration while increasing proliferation in myeloma cell lines.
- Network analysis reveals master regulators and enriched pathways associated with MM invasiveness.

## Abstract

To elucidate the role of transcriptional regulators (TRs) associated with invasiveness in multiple myeloma (MM), we conducted a systematic network analysis to identify key master regulators (MRs) that govern MM invasiveness. We employed a consensus clustering method based on a 24-gene signature to classify MM patients into high invasiveness (INV-H) and low invasiveness (INV-L) groups. Subsequently, we identified TRs specific to the INV-H and INV-L phenotypes as MRs using a network-based approach, and we validated the MR activities that correlated with the INV-H phenotype across multiple independent datasets. We evaluated the effect of MRs on patient outcomes in relation to the prognosis of MM. By utilizing siRNA to disrupt ERG expression in U266 and RPMI8226 cell lines, we evaluated the effects of the master regulator ERG on the proliferation, apoptosis, invasion, and migration of myeloma cell lines, and we confirmed the expression of ERG in patients with extramedullary MM. We assessed invasiveness using a 24-gene signature, categorizing patients into INV-H and INV-L groups. Our network identified MRs linked to MM invasiveness and revealed enriched signaling pathways. High ERG expression correlated with poor prognosis. ERG silencing reduced cell invasiveness, migration, and apoptosis, while promoting proliferation. Elevated ERG was found in extramedullary MM, and potential drug candidates, including Idarubicin, were identified for treatment. This study provides a comprehensive analysis of master regulators in EMM, contributing to targeted therapeutic strategies. We identified ERG as a marker for extramedullary invasion in MM, suggesting it as a potential therapeutic target for future interventions.

## Linked entities

- **Genes:** ERG (ETS transcription factor ERG) [NCBI Gene 2078]
- **Chemicals:** Idarubicin (PubChem CID 42890)
- **Diseases:** multiple myeloma (MONDO:0009693)

## Full-text entities

- **Genes:** GREM1 (gremlin 1, DAN family BMP antagonist) [NCBI Gene 26585] {aka C15DUPq, CKTSF1B1, CRAC1, CRCS4, DAND2, DRM}, ANXA3 (annexin A3) [NCBI Gene 306] {aka ANX3}, GAS1 (growth arrest specific 1) [NCBI Gene 2619], MROS (Melkersson-Rosenthal syndrome) [NCBI Gene 8011] {aka MRS}, E2F2 (E2F transcription factor 2) [NCBI Gene 1870] {aka E2F-2}, ERG (ETS transcription factor ERG) [NCBI Gene 2078] {aka LMPHM14, erg-3, p55}, TWIST1 (twist family bHLH transcription factor 1) [NCBI Gene 7291] {aka ACS3, BPES2, BPES3, CRS, CRS1, CSO}, ADAM12 (ADAM metallopeptidase domain 12) [NCBI Gene 8038] {aka ADAM12-OT1, CAR10, MCMP, MCMPMltna, MLTN, MLTNA}, TNFAIP6 (TNF alpha induced protein 6) [NCBI Gene 7130] {aka TSG-6, TSG6}, COL5A2 (collagen type V alpha 2 chain) [NCBI Gene 1290] {aka EDSC, EDSCL2}, F2R (coagulation factor II thrombin receptor) [NCBI Gene 2149] {aka CF2R, HTR, PAR-1, PAR1, TR}, VEGFA (vascular endothelial growth factor A) [NCBI Gene 7422] {aka L-VEGF, MVCD1, VEGF, VPF}, SNAI1 (snail family transcriptional repressor 1) [NCBI Gene 6615] {aka SLUGH2, SNA, SNAH, SNAIL, SNAIL1, dJ710H13.1}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}, ARRB1 (arrestin beta 1) [NCBI Gene 408] {aka ARB1, ARR1}, SNAI2 (snail family transcriptional repressor 2) [NCBI Gene 6591] {aka SLUG, SLUGH, SLUGH1, SNAIL2, WS2D}, MFAP5 (microfibril associated protein 5) [NCBI Gene 8076] {aka AAT9, MAGP-2, MAGP2, MFAP-5, MP25}, LMLN (leishmanolysin like peptidase) [NCBI Gene 89782] {aka GP63, INV, IX14, LMNL1, MSP}, PPARG (peroxisome proliferator activated receptor gamma) [NCBI Gene 5468] {aka CIMT1, FPLD3, GLM1, NR1C3, PPARG1, PPARG2}, NOTCH3 (notch receptor 3) [NCBI Gene 4854] {aka CADASIL, CADASIL1, CARASIL1, CASIL, FPLD1, IMF2}, ENG (endoglin) [NCBI Gene 2022] {aka END, HHT1, ORW1}, ANXA5 (annexin A5) [NCBI Gene 308] {aka ANX5, CPB-I, ENX2, HEL-S-7, PP4, RPRGL3}, FBN1 (fibrillin 1) [NCBI Gene 2200] {aka ACMICD, ECTOL1, FBN, GPHYSD2, MASS, MFLS}, SFRP4 (secreted frizzled related protein 4) [NCBI Gene 6424] {aka FRP-4, FRPHE, FRZB-2, PYL, sFRP-4}, COL5A1 (collagen type V alpha 1 chain) [NCBI Gene 1289] {aka EDSC, EDSCL1, FMDMF}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, COL1A1 (collagen type I alpha 1 chain) [NCBI Gene 1277] {aka CAFYD, EDSARTH1, EDSC, OI1, OI2, OI3}, NRAS (NRAS proto-oncogene, GTPase) [NCBI Gene 4893] {aka ALPS4, CMNS, N-ras, NCMS, NRAS1, NS6}, COL10A1 (collagen type X alpha 1 chain) [NCBI Gene 1300], DCN (decorin) [NCBI Gene 1634] {aka CSCD, DSPG2, PG40, PGII, PGS2, SLRR1B}, POSTN (periostin) [NCBI Gene 10631] {aka OSF-2, OSF2, PDLPOSTN, PN}, ASPN (asporin) [NCBI Gene 54829] {aka OS3, PLAP-1, PLAP1, SLRR1C}, ITGB1 (integrin subunit beta 1) [NCBI Gene 3688] {aka CD29, FNRB, GPIIA, MDF2, MSK12, VLA-BETA}, VCAN (versican) [NCBI Gene 1462] {aka CSPG2, ERVR, GHAP, PG-M, WGN, WGN1}, LOX (lysyl oxidase) [NCBI Gene 4015] {aka AAT10}, ME2 (malic enzyme 2) [NCBI Gene 4200] {aka ODS1}, HIF1A (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 3091] {aka HIF-1-alpha, HIF-1A, HIF-1alpha, HIF1, HIF1-ALPHA, MOP1}, THBS2 (thrombospondin 2) [NCBI Gene 7058] {aka EDSCLL3, TSP2}, FAP (fibroblast activation protein alpha) [NCBI Gene 2191] {aka DPPIV, FAPA, FAPalpha, SIMP}, DAB2 (DAB adaptor protein 2) [NCBI Gene 1601] {aka DOC-2, DOC2}, TIMP3 (TIMP metallopeptidase inhibitor 3) [NCBI Gene 7078] {aka HSMRK222, K222, K222TA2, SFD}, COL11A1 (collagen type XI alpha 1 chain) [NCBI Gene 1301] {aka CO11A1, COLL6, DFNA37, STL2}, SULF1 (sulfatase 1) [NCBI Gene 23213] {aka SULF-1}, SHROOM4 (shroom family member 4) [NCBI Gene 57477] {aka MRXSSDS, SHAP, shrm4}, INHBA (inhibin subunit beta A) [NCBI Gene 3624] {aka EDF, FRP}, PADI4 (peptidyl arginine deiminase 4) [NCBI Gene 23569] {aka PAD, PAD4, PADI5, PDI4, PDI5}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, MIR1179 (microRNA 1179) [NCBI Gene 100302235] {aka MIRN1179, hsa-mir-1179, mir-1179}, EPYC (epiphycan) [NCBI Gene 1833] {aka DSPG3, PGLB, Pg-Lb, SLRR3B}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}
- **Diseases:** inflammation (MESH:D007249), Cancer (MESH:D009369), prostate cancer (MESH:D011471), AML (MESH:D015470), lymphoma (MESH:D008223), renal dysfunction (MESH:D007674), insulin resistance (MESH:D007333), ALL (MESH:D054198), lung cancer (MESH:D008175), lesions (MESH:D009059), INV-H (MESH:C535918), hypoxic (MESH:D002534), hematologic malignancies (MESH:D019337), anemia (MESH:D000740), metastasis (MESH:D009362), chromosomal abnormalities (MESH:D002869), H (MESH:D000848), Genetic abnormalities (MESH:D030342), EMM (MESH:D009101), EMD (MESH:D020389), hypercalcemia (MESH:D006934)
- **Chemicals:** Ala129 (-), CO2 (MESH:D002245), 7AAD (MESH:C025942), streptomycin (MESH:D013307), formaldehyde (MESH:D005557), Idarubicin (MESH:D015255), penicillin (MESH:D010406), Homidium bromide (MESH:D004996), water (MESH:D014867), PBS (MESH:D007854), formazan (MESH:D005562), hydrogens (MESH:D006859), paraffin (MESH:D010232), Mitonafide (MESH:C019215), Lipofectamine 2000 (MESH:C086724), CCK-8 (MESH:D012844), WST-8 (MESH:C476329), PI (MESH:D010716)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** INV-H — Homo sapiens (Human), q26.2) GATA2, MECOM, Cancer cell line (CVCL_0C65), U266 — Homo sapiens (Human), Plasma cell myeloma, Cancer cell line (CVCL_0566), RPMI-8226 — Homo sapiens (Human), Plasma cell myeloma, Cancer cell line (CVCL_0014)

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12307296/full.md

## References

35 references — full list in the complete paper: https://tomesphere.com/paper/PMC12307296/full.md

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Source: https://tomesphere.com/paper/PMC12307296