# First organocatalytic, diastereoselective synthesis of tRNA wobble nucleosides: (R)- and (S)-methoxycarbonylhydroxymethyluridines (mchm5Us) and their acid analogues (chm5Us)

**Authors:** Tomasz Bartosik, Agnieszka Dziergowska, Blazej Kowalski, Grazyna Leszczynska

PMC · DOI: 10.1039/d5ra04760a · 2025-07-29

## TL;DR

Scientists developed a new method to selectively synthesize two forms of modified RNA building blocks important for genetic code flexibility.

## Contribution

First organocatalytic, diastereoselective synthesis of tRNA wobble nucleosides mchm5Us and chm5Us.

## Key findings

- A diastereoselective synthesis of (R)- and (S)-mchm5Us was achieved using cyanosilylation and Pinner reaction.
- The method was extended to synthesize their acid analogues, (R)- and (S)-chm5Us.
- The approach uses organo- and organometallic catalysis for efficient and selective production.

## Abstract

A diastereoselective organocatalytic synthesis of (R)- and (S)-methoxycarbonylhydroxymethyluridines (mchm5Us) and their acid analogues (chm5Us) was developed. The method employs organo- and organometallic-catalyzed cyanosilylation of 5-formyluridine to yield diastereomerically enriched TMS-protected cyanohydrins, which are converted via a Pinner reaction to (R)- and (S)-mchm5Us, then hydrolyzed to (R)- and (S)-chm5Us.

First diastereoselective synthesis of biologically relevant (R)- and (S)- methoxycarbonylhydroxymethyluridines (mchm5Us) and their acid analogues (chm5Us) was developed.

## Linked entities

- **Chemicals:** 5-formyluridine (PubChem CID 188967)

## Full-text entities

- **Genes:** ALKBH8 (alkB homolog 8, tRNA methyltransferase) [NCBI Gene 91801] {aka ABH8, MRT71, TRM9, TRMT9, TRMT9A}, NR5A1 (nuclear receptor subfamily 5 group A member 1) [NCBI Gene 2516] {aka AD4BP, ELP, FTZ1, FTZF1, POF7, SF-1}
- **Diseases:** bladder cancers (MESH:D001749), melanoma (MESH:D008545), intellectual disability (MESH:D008607), urothelial carcinomas (MESH:D014523), breast and colon cancers (MESH:D001943), ovarian cancer (MESH:D010051), developmental abnormalities (MESH:D006130), developmental delay (MESH:D002658)
- **Chemicals:** 1H-imidazole (MESH:C029899), Ti(OiPr)4 (MESH:C102815), pyridine (MESH:C023666), TBDMSCl (MESH:C404749), D2O (MESH:D017666), A (MESH:D001151), water (MESH:D014867), Ti (MESH:D014025), C-E (MESH:D002563), (R)-cyanohydrin (MESH:C430593), acetyl chloride (MESH:C081124), oil (MESH:D009821), H (MESH:D006859), aldehydes (MESH:D000447), ketones (MESH:D007659), uridine (MESH:D014529), sodium sulphate (MESH:C012036), chloroform (MESH:D002725), (R)- (MESH:D001120), acid (MESH:D000143), 5-carboxymethyluridine (MESH:C000668), brine (MESH:C017082), E (MESH:D004540), (S)-5-carboxyhydroxymethyluridine (MESH:C025321), Lewis acid (MESH:D058116), (S)- (MESH:D013455), imidates (MESH:D007096), platinum (MESH:D010984), HCl (MESH:D006851), C, D (MESH:D002104), (S)- and (R)-methoxycarbonylhydroxymethyluridines (-), 2H (MESH:D003903), silica (MESH:D012822), cyanide (MESH:D003486), silica gel (MESH:D058428), methanol (MESH:D000432), K (MESH:D011188), ACN (MESH:C032159), 5-formyluridine (MESH:C012983), 13C (MESH:C000615229), 3H (MESH:D014316), isopropanol (MESH:D019840), 5-methoxycarbonylmethyluridine (MESH:C030689), squaramide (MESH:C000609819), TMSCN (MESH:C058010), Sodium borohydride (MESH:C025364), thiourea (MESH:D013890), nucleoside (MESH:D009705), acetone (MESH:D000096), ethanol (MESH:D000431), ester (MESH:D004952), argon (MESH:D001128), quinine (MESH:D011803)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Bombyx mori (domestic silkworm, species) [taxon 7091], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Homo sapiens (human, species) [taxon 9606], C. elegans [taxon 328850]
- **Mutations:** M20A

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12305299/full.md

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Source: https://tomesphere.com/paper/PMC12305299