# Draft genome sequence of Bacillus safensis 2T-2, isolated from drinking water

**Authors:** Cornelius C. Bezuidenhout, Lesego G. Molale-Tom, Rinaldo K. Kritzinger, Oluwaseyi Samuel Olanrewaju

PMC · DOI: 10.1016/j.dib.2025.111870 · Data in Brief · 2025-07-09

## TL;DR

This paper reports the genome sequence of a Bacillus safensis strain from drinking water, revealing antibiotic resistance and potential for producing useful compounds.

## Contribution

First report of Bacillus safensis in treated drinking water with detailed genomic and biosynthetic analysis.

## Key findings

- Genome has 3.78 Mb with 4000 coding sequences and six antibiotic resistance genes.
- Strain shows low pathogenic potential but has 12 secondary metabolite gene clusters for antimicrobial and biosurfactant production.
- Phylogenetic analysis confirms the strain as B. safensis, closely related to B. safensis F0–36b.

## Abstract

Bacillus safensis 2T-2 was isolated from potable water at a municipal water treatment facility in the North West province of South Africa, representing the first report of this species in treated drinking water systems. Whole genome sequencing revealed a 3.78 Mb genome with 41.3 % GC content and 4000 coding sequences distributed across 126 contigs. Genome analysis identified six antibiotic resistance genes, including vancomycin resistance genes (vanT, vanY), fosfomycin resistance (fosBx1), chloramphenicol resistance (cat86), and two disinfectant resistance genes (qacG, qacJ). Despite the presence of resistance genes, PathogenFinder analysis confirmed low pathogenic potential (0.168 probability). The strain demonstrated significant biosynthetic capabilities with 12 secondary metabolite gene clusters, including antimicrobial compound production (plantazolicin), biosurfactants (lichenysin), siderophores (bacillibactin, schizokinen), and the lipopeptide fengycin. Five bacteriocin gene clusters were identified, containing three core peptide genes (UviB, plantazolicin, pumilarin) with associated modification and transport genes. Phylogenetic analysis positioned strain 2T-2 closest to B. safensis F0–36b, confirming species identification. These findings highlight the dual nature of environmental bacteria in water systems, possessing both concerning antibiotic resistance traits and beneficial biotechnological potential, emphasizing the need for enhanced water treatment strategies while revealing opportunities for bioactive compound discovery.

## Linked entities

- **Genes:** vanT (serine racemase VanT catalytic subunit) [NCBI Gene 42857389], vanY (VanY-A/VanY-F/VanY-M family D-Ala-D-Ala carboxypeptidase) [NCBI Gene 34217656], qacG (quaternary ammonium compound efflux SMR transporter QacG) [NCBI Gene 79052829], uviB (involved in bacteriocin production or immunity) [NCBI Gene 26622493]
- **Chemicals:** vancomycin (PubChem CID 14969), fosfomycin (PubChem CID 441029), chloramphenicol (PubChem CID 5959)
- **Species:** Bacillus safensis (taxon 561879)

## Full-text entities

- **Chemicals:** vancomycin (MESH:D014640), water (MESH:D014867), fosfomycin (MESH:D005578), fengycin (MESH:C049972), lipopeptide (MESH:D055666), UviB (-), chloramphenicol (MESH:D002701), bacillibactin (MESH:C430721), schizokinen (MESH:C000766)

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12301900/full.md

## References

27 references — full list in the complete paper: https://tomesphere.com/paper/PMC12301900/full.md

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Source: https://tomesphere.com/paper/PMC12301900