# Tricyclic Isatin Derivatives as Anti-Inflammatory Compounds with High Kinase Binding Affinity

**Authors:** Alexander V. Uvarov, Igor A. Schepetkin, Mark T. Quinn, Andrei I. Khlebnikov

PMC · DOI: 10.3390/molecules30142914 · 2025-07-10

## TL;DR

This study shows that tricyclic isatin oximes can reduce inflammation and bind to multiple kinases, making them promising for anti-inflammatory and neuroprotective drug development.

## Contribution

The study introduces new tricyclic isatin oxime derivatives with high kinase binding affinity and anti-inflammatory activity.

## Key findings

- Compounds 5a and 5d inhibited NF-κB/AP-1 activity and IL-6 production in monocytic cells.
- These compounds showed nanomolar/submicromolar binding affinity to 12 kinases, including DYRK1A and PIM1.
- Molecular modeling confirmed the binding modes of the compounds in kinase catalytic sites.

## Abstract

Oximes have been reported to exhibit useful pharmaceutical properties, including compounds with anticancer, anti-arthritis, antibacterial, and neuroprotective activities. Many oximes are kinase inhibitors and have been shown to inhibit various kinases. Herein, a panel of oxime derivatives of tricyclic isatins was synthesized and evaluated for inhibition of cellular inflammatory responses and binding affinity to several kinases. Compounds 5a and 5d (a.k.a. NS-102), which have an unsubstituted oxime group, inhibited lipopolysaccharide (LPS)-induced nuclear factor-κB/activating protein 1 (NF-κB/AP-1) transcriptional activity in human THP-1Blue monocytic cells and interleukin-6 (IL-6) production in human MonoMac-6 monocytic cells, with IC50 values in the micromolar range. These compounds also inhibited LPS-induced production of several other proinflammatory cytokines, including IL-1α, IL-1β, monocyte chemoattractant protein-1 (MCP-1), and tumor necrosis factor (TNF) in MonoMac-6 cells. Compounds 5a and 5d exhibited nanomolar/submicromolar binding affinity toward several kinase targets. The most potent inhibitor, 5d (3-(hydroxyimino)-5-nitro-1,3,6,7,8,9-hexahydro-2H-benzo[g]indol-2-one), demonstrated high binding affinity for 12 kinases, including DYRK1A, DYRK1B, PIM1, Haspin, HIPK1-3, IRAK1, NEK10, and DAPK1-3. Molecular modeling suggested modes of binding interaction of selected compounds in the DYRK1A and PIM1 catalytic sites that agreed with the experimental binding data. Our results demonstrate that tricyclic isatin oximes could be potential candidates for developing anti-inflammatory drugs with neuroprotective effects for treating neurodegenerative diseases.

## Linked entities

- **Proteins:** NFKB1 (nuclear factor kappa B subunit 1), FOS (Fos proto-oncogene, AP-1 transcription factor subunit), DYRK1A (dual specificity tyrosine phosphorylation regulated kinase 1A), DYRK1B (dual specificity tyrosine phosphorylation regulated kinase 1B), PIM1 (Pim-1 proto-oncogene, serine/threonine kinase), HASPIN (histone H3 associated protein kinase), IRAK1 (interleukin 1 receptor associated kinase 1), NEK10 (NIMA related kinase 10)
- **Chemicals:** 5a (PubChem CID 168349136), NS-102 (PubChem CID 4461601)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347] {aka GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1}, IL1A (interleukin 1 alpha) [NCBI Gene 3552] {aka IL-1 alpha, IL-1A, IL1, IL1-ALPHA, IL1F1}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, JUNB (JunB proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 3726] {aka AP-1}, DYRK1B (dual specificity tyrosine phosphorylation regulated kinase 1B) [NCBI Gene 9149] {aka AOMS3, MIRK}, DYRK1A (dual specificity tyrosine phosphorylation regulated kinase 1A) [NCBI Gene 1859] {aka DYRK, DYRK1, HP86, MNB, MNBH, MRD7}, HASPIN (histone H3 associated protein kinase) [NCBI Gene 83903] {aka GSG2}, PIM1 (Pim-1 proto-oncogene, serine/threonine kinase) [NCBI Gene 5292] {aka PIM}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, IRAK1 (interleukin 1 receptor associated kinase 1) [NCBI Gene 3654] {aka IRAK, pelle}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, NEK10 (NIMA related kinase 10) [NCBI Gene 152110] {aka CILD44}
- **Diseases:** neurodegenerative diseases (MESH:D019636), Inflammatory (MESH:D007249), arthritis (MESH:D001168)
- **Chemicals:** Oximes (MESH:D010091), NS-102 (MESH:C084273), 3-(hydroxyimino)-5-nitro-1,3,6,7,8,9-hexahydro-2H-benzo[g]indol-2-one (-), LPS (MESH:D008070), isatins (MESH:D007510)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** THP-1Blue — Homo sapiens (Human), Burkitt lymphoma, Cancer cell line (CVCL_1967), MonoMac-6 — Homo sapiens (Human), Adult acute monocytic leukemia, Cancer cell line (CVCL_1426)

## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12300041/full.md

---
Source: https://tomesphere.com/paper/PMC12300041