# Didemnosides A and B: Antiproliferative Nucleosides from the Red Sea Marine Tunicate Didemnum Species

**Authors:** Lamiaa A. Shaala, Diaa T. A. Youssef, Hadeel Almagthali, Ameen M. Almohammadi, Wafaa T. Arab, Torki Alzughaibi, Noor M. Bataweel, Reham S. Ibrahim

PMC · DOI: 10.3390/md23070262 · Marine Drugs · 2025-06-23

## TL;DR

Scientists isolated new compounds from a Red Sea tunicate, one of which strongly inhibits cancer cell growth and could lead to new anticancer drugs.

## Contribution

The discovery of didemnosides A and B, novel antiproliferative nucleosides with potential for drug development.

## Key findings

- Didemnoside A (compound 1) inhibited MCF-7 cancer cells with an IC50 of 0.597 μM.
- Compounds 1, 2, and 4–7 moderately inhibited SW-1222 and PC-3 cancer cells with IC50 values between 5.25 and 9.36 μM.
- Molecular docking showed stable interactions with cancer-related targets like ESR1, TOP2A, and CDK5.

## Abstract

Marine tunicates are a very attractive and abundant source of secondary metabolites with chemical diversity and biological activity. Fractionation and purification of the organic extract of the Red Sea tunicate Didemnum species resulted in the isolation and identification of three new compounds, didemnosides A and B (1 and 2) and 1,1′,3,3′-bisuracil (3), together with thymidine (4), 2′-deoxyuridine (5), homarine (6), and acetamide (7). Planar structures of the compounds were explained through analyses of their 1D (1H and 13C) and 2D (1H–1H COSY, HSQC, and HMBC) NMR spectra and high-resolution mass spectral determinations. Compound 1 exhibited the highest growth inhibition toward the MCF-7 cancer cell line with IC50 values of 0.597 μM, while other compounds were inactive (≥50 μM) against this cell line. On the other hand, compounds 1, 2, and 4–7 moderately inhibited SW-1222 and PC-3 cells with IC50 values ranging between 5.25 and 9.36 μM. Molecular docking analyses of the top three active compounds on each tested cell line exposed stable interactions into the active pockets of estrogen receptor alpha (ESR1), human topoisomerase II alpha (TOP2A), and cyclin-dependent kinase 5 (CDK5) which are contemplated as essential targets in cancer treatments. Thus, compound 1 represents a scaffold for the development of more effective anticancer drugs.

## Linked entities

- **Proteins:** ESR1 (estrogen receptor 1), TOP2A (DNA topoisomerase II alpha), CDK5 (cyclin dependent kinase 5)
- **Chemicals:** thymidine (PubChem CID 5789), 2′-deoxyuridine (PubChem CID 13712), homarine (PubChem CID 3620), acetamide (PubChem CID 178)
- **Diseases:** cancer (MONDO:0004992)

## Full-text entities

- **Genes:** ESR1 (estrogen receptor 1) [NCBI Gene 2099] {aka ER, ESR, ESRA, ESTRR, Era, NR3A1}, TOP2A (DNA topoisomerase II alpha) [NCBI Gene 7153] {aka TOP2, TOP2alpha, TOPIIA, TP2A}, CDK5 (cyclin dependent kinase 5) [NCBI Gene 1020] {aka LIS7, PSSALRE}
- **Diseases:** cancer (MESH:D009369)
- **Chemicals:** homarine (MESH:C010981), 2'-deoxyuridine (MESH:D003857), thymidine (MESH:D013936), acetamide (MESH:C030686), 1,1',3,3'-bisuracil (-), Nucleosides (MESH:D009705), 13C (MESH:C000615229)
- **Species:** Didemnum (genus) [taxon 107394], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** SW-1222 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_3886), PC-3 — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_0035), MCF-7 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0031)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12298903/full.md

## Figures

10 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12298903/full.md

## References

51 references — full list in the complete paper: https://tomesphere.com/paper/PMC12298903/full.md

---
Source: https://tomesphere.com/paper/PMC12298903