# EM Dipeptide Enhances Milk Protein Secretion: Evidence from Integrated Metabolomic and Transcriptomic Analysis

**Authors:** Yuqing Liu, Yuhao Yan, Runjun Yang, Xiaohui Li, Chuang Zhai, Xuan Wu, Xibi Fang, Boqun Liu

PMC · DOI: 10.3390/metabo15070476 · Metabolites · 2025-07-14

## TL;DR

A methionine-containing dipeptide called EM boosts milk protein production in mammary cells, suggesting potential for improving lactation through nutritional interventions.

## Contribution

This study demonstrates that EM enhances milk protein gene expression and reprograms metabolic pathways in mammary cells.

## Key findings

- EM treatment increased cell proliferation and upregulated milk protein genes CSN1S1, CSN2, and CSN3.
- EM reprogrammed amino acid metabolism, lipid biosynthesis, and nutrient transport pathways.
- Genes like SLC7A11, APOE, and ABCA1 were identified as key nodes linking metabolic and transcriptional changes.

## Abstract

Background/Objectives: Breast milk provides essential nutrition and immune protection to support infant growth and development. However, insufficient breast milk remains a serious issue, and bioactive peptides represent a potential strategy to promote lactation. In this study, we investigated the impact of a methionine-containing dipeptide, EM, on MCF-10A mammary epithelial cells. Methods: MCF-10A cells were treated with EM, and cell proliferation and the expression of key milk protein genes were assessed. Integrated transcriptomic and untargeted metabolomic analyses were performed to identify EM-induced changes in metabolic and gene expression pathways. Results: EM treatment significantly enhanced cell proliferation and upregulated the expression of key milk protein genes (CSN1S1 (casein alpha-S1, encoding alpha-S1 casein), CSN2 (casein beta, encoding beta-casein), and CSN3 (casein kappa, encoding kappa-casein)) at both transcriptional and protein levels compared to controls. Integrated transcriptomic and metabolomic analyses revealed that EM reprogrammed amino acid metabolism, lipid biosynthesis, and nutrient transport pathways. Core genes such as SLC7A11, APOE, and ABCA1 were identified as critical nodes linking metabolic and transcriptional networks. Conclusions: These findings indicate that EM may promote lactogenic activity by modulating metabolic and transcriptional networks in vitro, highlighting the potential of dipeptide-based nutritional interventions, which warrants further in vivo validation.

## Linked entities

- **Genes:** CSN1S1 (casein alpha s1) [NCBI Gene 1446], CSN2 (casein beta) [NCBI Gene 1447], CSN3 (casein kappa) [NCBI Gene 1448], SLC7A11 (solute carrier family 7 member 11) [NCBI Gene 23657], APOE (apolipoprotein E) [NCBI Gene 348], ABCA1 (ATP binding cassette subfamily A member 1) [NCBI Gene 19]
- **Chemicals:** EM (PubChem CID 6426949)

## Full-text entities

- **Genes:** ABCA1 (ATP binding cassette subfamily A member 1) [NCBI Gene 19] {aka ABC-1, ABC1, CERP, HDLCQTL13, HDLDT1, HPALP1}, SLC7A11 (solute carrier family 7 member 11) [NCBI Gene 23657] {aka CCBR1, xCT}, CSN2 (casein beta) [NCBI Gene 1447] {aka CASB, PDC213}, CSN1S1 (casein alpha s1) [NCBI Gene 1446] {aka CASA, CSN1}, APOE (apolipoprotein E) [NCBI Gene 348] {aka AD2, APO-E, ApoE4, LDLCQ5, LPG}, CSN3 (casein kappa) [NCBI Gene 1448] {aka CNS10, CSN10, CSNK, KCA}
- **Chemicals:** Dipeptide (MESH:D004151), amino acid (MESH:D000596), lipid (MESH:D008055), EM (MESH:D004961), methionine (MESH:D008715)
- **Cell lines:** MCF-10A — Homo sapiens (Human), Spontaneously immortalized cell line (CVCL_0598)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12298848/full.md

## References

50 references — full list in the complete paper: https://tomesphere.com/paper/PMC12298848/full.md

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Source: https://tomesphere.com/paper/PMC12298848