# Genotype–Phenotype Correlation of TNF-α (−238, rs361525) and Cystatin C for Early Detection of Sepsis-Associated AKI and Its Severity in Critically Ill Neonates

**Authors:** Shimaa Abdelsattar, Hiba S. Al-Amodi, Mahmoud Nazih, Eman H. M. Salem, Rasha G. Mostafa, Shymaa S. Menshawy, Amany A. El-Banna, Basma M. Abdelgawad, Omnia S. Nabih, Yasmin Mohsen, Elaf Abozeid, Mai El-Sayad Abd El-Hamid, Nabil A. Shoman, Naglaa Abdelmawgoud Ahmed, Mai Mohamed Nabil, Dalia Abdel-Wahab Mohamed

PMC · DOI: 10.3390/ijms26146738 · International Journal of Molecular Sciences · 2025-07-14

## TL;DR

This study explores how genetic variations and a protein marker can help detect kidney injury in critically ill newborns caused by sepsis.

## Contribution

The study identifies a novel combination of TNF-α genotype and cystatin C as a diagnostic and prognostic biomarker for sepsis-associated acute kidney injury in neonates.

## Key findings

- GA + AA genotypes of TNF-α (−238, rs361525) are strong predictors of sepsis-associated AKI risk.
- Elevated cystatin C levels are a sensitive biomarker for adverse outcomes in these patients.
- Combining genotype and cystatin C improves early detection and severity prediction of S-AKI.

## Abstract

Sepsis-associated acute kidney injury (S-AKI) represents a significant health problem associated with adverse outcomes. Our study aimed to assess the value of serum cystatin-C (sCysC) and TNF-α (rs361525) in combination for diagnosing S-AKI patients and predicting their adverse outcomes. The study included 100 critically ill neonates and 100 controls. Patients were categorized into an S-AKI group and a non-AKI group. TNF-α (−238, rs361525) genotyping was performed using RT-PCR, and sCysC was assessed using ELISA. Our study showed a fundamental difference in the genotype frequencies of TNF-α (−238, rs361525) and SNP between S-AKI and non-AKI patients. Furthermore, there was a significant relationship between cystatin C and TNF-α (−238, rs361525), where cystatin C was higher in patients with AA alleles than in patients with GA and GG alleles. Combining GA + AA genotypes with elevated serum cystatin-C levels can serve as a potential diagnostic and prognostic biomarker for AKI development in this population. The GA/AA genotypes independently predicted S-AKI risk (OR = 6.64, p < 0.001). At the same time, elevated sCysC (>9.4 mg/L) emerged as a sensitive biomarker (AUC = 0.848) and independent predictor of adverse outcomes. Collectively, these findings contribute to the growing field of personalized medicine and represent a strategic advantage, enabling prevention-focused care rather than the treatment of established disease.

## Linked entities

- **Genes:** TNF (tumor necrosis factor) [NCBI Gene 7124]
- **Proteins:** CYSTATIN-C (cystatin-C)

## Full-text entities

- **Genes:** CST3 (cystatin C) [NCBI Gene 1471] {aka ADLDWA, ARMD11, HEL-S-2}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}
- **Diseases:** S-AKI (MESH:D058186), Sepsis (MESH:D018805), Critically Ill (MESH:D016638)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** rs361525

## Full text

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## Figures

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## References

55 references — full list in the complete paper: https://tomesphere.com/paper/PMC12295153/full.md

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Source: https://tomesphere.com/paper/PMC12295153