# Random Insertion Reporter Gimmicks Powered by Cut-and-Paste DNA Transposons

**Authors:** Yamato Kasahara, Kentaro Semba, Shinya Watanabe, Kosuke Ishikawa

PMC · DOI: 10.3390/biomedicines13071682 · 2025-07-09

## TL;DR

This paper explores how DNA transposons, which move randomly in the genome, can be used to create reporter cells that help discover new biological functions and improve drug screening.

## Contribution

The novelty lies in using the random insertion capability of DNA transposons to generate sensitive reporter systems for functional genomics and drug discovery.

## Key findings

- Random transposon insertions can be harnessed to create reporter cells for identifying functional markers.
- The stochastic nature of transposon integration enhances genome-wide screening approaches.
- Transposon-based systems offer new platforms for drug screening and signaling pathway discovery.

## Abstract

Transposons are mobile genetic elements capable of moving within the genome. Leveraging this property—particularly the cut-and-paste mechanism of DNA transposons—has enabled the development of technologies for inserting exogenous DNA fragments into host genomes. While targeted integration is a key goal for therapeutic applications, this review highlights the value of their intrinsic randomness. By combining the ability to freely design the DNA cargo with the stochastic nature of transposon integration, it becomes possible to generate highly sensitive reporter cells. These can be used to efficiently identify functional markers, uncover novel signaling pathways, and establish innovative platforms for drug screening. As more subfamilies of transposons become available for research use, their complementary biases may enhance the coverage and diversity of genome-wide screening approaches. Although inherently unpredictable, this strategy embraces randomness as a strength, and we propose that it holds great promise for driving new advances in biology, cellular engineering, and medical research.

## Full-text entities

- **Genes:** Blm (Bloom syndrome, RecQ like helicase) [NCBI Gene 12144], HSPA5 (heat shock protein family A (Hsp70) member 5) [NCBI Gene 3309] {aka BIP, GRP78, HEL-S-89n}, OSBPL9 (oxysterol binding protein like 9) [NCBI Gene 114883] {aka ORP-9, ORP9}, GAL4 (galactose-responsive transcription factor GAL4) [NCBI Gene 855828] {aka GAL81}, LINC-PINT (long intergenic non-protein coding RNA, p53 induced transcript) [NCBI Gene 378805] {aka LincRNA-Pint, MKLN1-AS1, PINT, PINT87aa, TISPL}, TSKU (tsukushi, small leucine rich proteoglycan) [NCBI Gene 25987] {aka E2IG4, LRRC54, TSK}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, BDKRB2 (bradykinin receptor B2) [NCBI Gene 624] {aka B2R, BK-2, BK2, BKR2, BRB2}, CYP24A1 (cytochrome P450 family 24 subfamily A member 1) [NCBI Gene 1591] {aka CP24, CYP24, HCAI, HCINF1, P450-CC24}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}
- **Diseases:** HCC (MESH:D006528), CRC (MESH:D015179), leukemia (MESH:D007938), metabolic disorders (MESH:D008659), hematological malignancies (MESH:D019337), squamous cell carcinoma (MESH:D002294), diabetes (MESH:D003920), cancer (MESH:D009369), injury to (MESH:D014947), glioma (MESH:D005910)
- **Chemicals:** calcitriol (MESH:D002117), Forskolin (MESH:D005576), Cas12 (-), bexarotene (MESH:D000077610), tunicamycin (MESH:D014415), vitamin A (MESH:D014801), thapsigargin (MESH:D019284), vitamin D (MESH:D014807)
- **Species:** Ipomoea (genus) [taxon 4119], Drosophila melanogaster (fruit fly, species) [taxon 7227], Oryza sativa (Asian cultivated rice, species) [taxon 4530], Homo sapiens (human, species) [taxon 9606], Danio rerio (leopard danio, species) [taxon 7955], Gasterosteus aculeatus (three spined stickleback, species) [taxon 69293], teschovirus A1 (no rank) [taxon 85506], Mus musculus (house mouse, species) [taxon 10090], Ipomoea purpurea (common morning-glory, species) [taxon 4121], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932]
- **Cell lines:** CHO — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_0213), 293T — Homo sapiens (Human), Transformed cell line (CVCL_0063)

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12292965/full.md

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Source: https://tomesphere.com/paper/PMC12292965