# Single-Molecule Detection of Optical Signals Using DNA-Based Plasmonic Nanostructures

**Authors:** Renjie Niu, Jintian Shao, Mingnan Wu, Chang Liu, Jie Chao

PMC · DOI: 10.3390/bios15070398 · 2025-06-20

## TL;DR

This review discusses how DNA-based plasmonic nanostructures can detect single-molecule optical signals, offering high sensitivity for biomedical and environmental applications.

## Contribution

The paper reviews the use of DNA-based plasmonic nanostructures for single-molecule optical detection, highlighting their design and performance advantages.

## Key findings

- DNA origami enables precise construction of metallic nanostructures for enhanced optical signal detection.
- Programmable DNA structures allow customization for specific detection needs and improve sensitivity.
- Applications include surface-enhanced Raman spectroscopy and fluorescence for single-molecule analysis.

## Abstract

Single-molecule optical signal detection provides high sensitivity and specificity for the detection of biomolecules and chemical substances, which is of significant importance in fields such as biomedicine, environmental monitoring, and materials science. In recent years, DNA-based plasmonic nanostructures have emerged as powerful tools for achieving single-molecule optical signal detection due to their unique self-assembly properties and excellent optical performance. In particular, DNA origami technology enables the precise construction of metallic nanostructures with specific shapes and functions, which can effectively enhance the interaction between light and matter, thereby significantly increasing signal intensity and detection sensitivity. Furthermore, the programmability of DNA not only simplifies the implementation of single-molecule operations but also allows researchers to design and optimize nanostructures according to specific detection requirements. This review will explore the applications of DNA-based plasmonic nanostructures in single-molecule optical signal detection, including surface-enhanced Raman spectroscopy and enhanced fluorescence for single-molecule signal detection. We will analyze their working principles, advantages, current research progress, and future research directions. By summarizing the work in this field, we hope to provide references and insights for researchers, contributing to the advancement of biomedicine and environmental monitoring.

## Full-text entities

- **Genes:** CYCS (cytochrome c, somatic) [NCBI Gene 54205] {aka CYC, HCS, THC4}, F2 (coagulation factor II, thrombin) [NCBI Gene 2147] {aka PT, RPRGL2, THPH1}, MIR21 (microRNA 21) [NCBI Gene 406991] {aka MIRN21, hsa-mir-21, miR-21, miRNA21}, CAMP (cathelicidin antimicrobial peptide) [NCBI Gene 820] {aka CAP-18, CAP18, CRAMP, FALL-39, FALL39, HSD26}
- **Diseases:** injury to (MESH:D014947), acute kidney injury (MESH:D058186), sepsis (MESH:D018805)
- **Chemicals:** carbon (MESH:D002244), alkyne (MESH:D000480), Au (MESH:D006046), peridinin (MESH:C016040), oligonucleotide (MESH:D009841), Cy5 (MESH:C085321), AgNP (-), silicon (MESH:D012825), Rhodamine 6G (MESH:C026188), reactive oxygen species (MESH:D017382), metal (MESH:D008670), hemin (MESH:D006427), Ag (MESH:D012834), Texas Red (MESH:C034657), rhodamine (MESH:D012235), porphyrin (MESH:D011166), sulfonated (MESH:D000476), ThT (MESH:C009462)
- **Species:** Homo sapiens (human, species) [taxon 9606], Cowpea chlorotic mottle virus (no rank) [taxon 12303], Zika virus (no rank) [taxon 64320]

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12292879/full.md

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Source: https://tomesphere.com/paper/PMC12292879