# Characterization and bioactivity potential of marine sponges (Biemna fistulosa, Callyspongia diffusa, and Haliclona fascigera) from Kenyan coastal waters

**Authors:** Teresia Nyambura Wacira, Huxley Mae Makonde, Joseph Nyingi Kamau, Christopher Mulanda Aura, Cromwell Mwiti Kibiti, Awatif Abid Al-Judaibi, Awatif Abid Al-Judaibi, Awatif Abid Al-Judaibi

PMC · DOI: 10.1371/journal.pone.0325642 · PLOS One · 2025-07-24

## TL;DR

This study explores marine sponges from Kenya for bioactive compounds that could be useful in developing new antibiotics and antifungal drugs.

## Contribution

The study identifies new sponge species and their extracts with strong antimicrobial activity against human pathogens.

## Key findings

- Methanolic extracts of Biemna fistulosa and Haliclona fascigera showed strong antibacterial activity against Escherichia coli.
- Callyspongia diffusa's ethyl acetate extract exhibited higher inhibitory activity against Pseudomonas aeruginosa than standard antibiotics.
- GC-MS analysis identified 114 compounds in sponge extracts, with 11.4% showing documented antimicrobial properties.

## Abstract

Sponges have been reported as a rich source of bioactive compounds, which could potentially be developed into lead compounds for pharmaceutical use. The present study aimed to identify sponges and assess the biological activity of their extracts against human disease-causing organisms, including Escherichia coli, Pseudomonas aeruginosa, Staphylococcus aureus, and Candida albicans. Morphological characterization and DNA barcoding of the cytochrome c oxidase subunit I (COI) gene characterized three sponge species (Biemna fistulosa, Callyspongia diffusa and Haliclona fascigera). The Kirby-Bauer test assessed the antimicrobial activity of the extracts, and the inhibition zone diameters (IZD) were measured. The extracts were further subjected to minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) tests to determine the antibiotic susceptibility. The Gas Chromatography-Mass Spectrometry (GC-MS) was used to identify and quantify the organic compounds in the sponges’ extracts. The methanolic extract of B. fistulosa (28.00 ± 3.5 mm) and H. fascigera. (28.33 ± 3.8 mm) exhibited a broad spectrum of antibacterial activity against E. coli, surpassing the positive control (27.67 ± 0.9 mm). The inhibitory activity of ethyl acetate extract of the C. diffusa (29.33 ± 2.4 mm) against P. aeruginosa was observed to be higher compared to the standard antibiotic streptomycin (26.67 ± 0.7 mm). The methanolic extract of H. fascigera demonstrated the lowest MIC (0.53 ± 0.0 mg mL-1) compared to the streptomycin drug (1.36 ± 0.0 mg mL-1), and showed an MBC of 1.25 mg mL-1 against E. coli. The GC-MS chromatogram data analysis identified 114 distinct compounds categorized into 39 classes across three sponge extracts: 11.4% of these compounds demonstrated documented antimicrobial activity against human pathogens. This study corroborates sponges as a promising source of bioactive compounds, which are valuable leads for drug discovery and development. Future research must explore their mechanisms, molecular-level toxicity, and lead optimization to enhance drug development.

## Linked entities

- **Genes:** COX1 (cytochrome c oxidase subunit I) [NCBI Gene 4512]
- **Species:** Biemna fistulosa (taxon 344324), Callyspongia diffusa (taxon 948461), Haliclona fascigera (taxon 281038), Escherichia coli (taxon 562), Pseudomonas aeruginosa (taxon 287), Staphylococcus aureus (taxon 1280), Candida albicans (taxon 5476)

## Full-text entities

- **Diseases:** toxicity (MESH:D064420)
- **Chemicals:** streptomycin (MESH:D013307), ethyl acetate extract (-)
- **Species:** Candida albicans (species) [taxon 5476], Escherichia coli (E. coli, species) [taxon 562], Staphylococcus aureus (species) [taxon 1280], Pseudomonas aeruginosa (species) [taxon 287], Centaurea diffusa (species) [taxon 124929], Callyspongia diffusa (species) [taxon 948461], Biemna fistulosa (species) [taxon 344324], Homo sapiens (human, species) [taxon 9606], Haliclona fascigera (species) [taxon 281038], Porifera (sponges, phylum) [taxon 6040]

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12289071/full.md

## References

103 references — full list in the complete paper: https://tomesphere.com/paper/PMC12289071/full.md

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Source: https://tomesphere.com/paper/PMC12289071