# Identification of transcription factors that regulate placental sFLT1 expression

**Authors:** Qing Yong, Carin van der Keur, Jacqueline D H Anholts, Hanneke Kapsenberg, Hailiang Mei, Jan A Bruijn, Michael Eikmans, Hans J Baelde

PMC · DOI: 10.1093/molehr/gaaf031 · 2025-07-09

## TL;DR

This study identifies transcription factors that regulate sFLT1 expression in placental cells, which could help in treating preeclampsia and related conditions.

## Contribution

The paper identifies 15 transcription factors that may regulate sFLT1 expression in placental cells.

## Key findings

- 197 transcription factors were differentially expressed between CTBs and EVTs.
- 15 DETFs were predicted to regulate sFLT1, including FOXM1 and CEBPB, confirmed in vitro.
- sFLT1 is involved in multiple signaling pathways and interacts with several proteins.

## Abstract

Increased soluble FMS-like tyrosine kinase 1 (sFLT1) levels have been associated with preeclampsia, chronic kidney diseases, and kidney transplant rejection. However, lower levels of sFLT1 exhibit beneficial properties in various processes, such as the organization of the actin cytoskeleton in podocytes and immune regulation in healthy pregnancy. Therefore, understanding the transcriptional regulation of sFLT-1 and preserving appropriate expression levels are critical for effective treatment of preeclampsia and other diseases. Cytotrophoblasts (CTBs) were isolated from three first-trimester placentas and differentiated into extravillous trophoblasts (EVTs) for 6 days. RNA was extracted at different time points and used for RNA sequencing. Differentially expressed genes (DEGs) and transcription factors (DETFs) were analyzed. Transcription factor (TF) enrichment analysis and pathway analysis were performed on DEGs screened from EVTs and CTBs. TF inhibitors were added to primary CTBs directly or during CTB to EVT differentiation to confirm the regulatory effect of TFs on sFLT1 expression. In total, 197 TFs were differentially expressed between CTBs and EVTs, among which 15 DETFs (EPAS1, ETS1, TBX3, CEBPB, FLI1, TEAD4, GATA4, TBX2, LMX1B, ARNT, FOXM1, ERF, PRDM1, TFAP2A, and NR2F2) that potentially regulate sFLT1 expression were predicted by ChEA3 and KnockTF software. The mRNA levels of 15 DETFs were validated upon CTBs differentiation into both EVTs and syncytiotrophoblasts. The regulatory effects of FOXM1 and CEBPB were confirmed in vitro experiments, and their expression patterns were validated during CTBs differentiation into EVTs and in first-trimester placentas. Pathway analysis showed that FLT1 was involved in P13K-Akt, Rap1, MAPK, Ras, and HIF-1 signaling pathways, focal adhesion, and cytokine–cytokine receptor interaction. Protein–protein interaction analysis showed that FLT4, PDGFB, TGFB1, IL6R, TNFRSF1B, CSF1R, and TGFB2 interact with FLT1. The identified TFs can serve as therapeutic targets in preeclampsia to keep the sFLT1 levels within appropriate limits.

## Linked entities

- **Genes:** Flt1 (FMS-like tyrosine kinase 1) [NCBI Gene 14254], EPAS1 (endothelial PAS domain protein 1) [NCBI Gene 2034], ETS1 (ETS proto-oncogene 1, transcription factor) [NCBI Gene 2113], TBX3 (T-box transcription factor 3) [NCBI Gene 6926], CEBPB (CCAAT enhancer binding protein beta) [NCBI Gene 1051], FLI1 (Fli-1 proto-oncogene, ETS transcription factor) [NCBI Gene 2313], TEAD4 (TEA domain transcription factor 4) [NCBI Gene 7004], GATA4 (GATA binding protein 4) [NCBI Gene 2626], TBX2 (T-box transcription factor 2) [NCBI Gene 6909], LMX1B (LIM homeobox transcription factor 1 beta) [NCBI Gene 4010], ARNT (aryl hydrocarbon receptor nuclear translocator) [NCBI Gene 405], FOXM1 (forkhead box M1) [NCBI Gene 2305], ERF (ETS2 repressor factor) [NCBI Gene 2077], PRDM1 (PR/SET domain 1) [NCBI Gene 639], TFAP2A (transcription factor AP-2 alpha) [NCBI Gene 7020], NR2F2 (nuclear receptor subfamily 2 group F member 2) [NCBI Gene 7026], FLT1 (fms related receptor tyrosine kinase 1) [NCBI Gene 2321], FLT4 (fms related receptor tyrosine kinase 4) [NCBI Gene 2324], PDGFB (platelet derived growth factor subunit B) [NCBI Gene 5155], TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040], IL6R (interleukin 6 receptor) [NCBI Gene 3570], TNFRSF1B (TNF receptor superfamily member 1B) [NCBI Gene 7133], CSF1R (colony stimulating factor 1 receptor) [NCBI Gene 1436], TGFB2 (transforming growth factor beta 2) [NCBI Gene 7042]
- **Diseases:** preeclampsia (MONDO:0005081)

## Full-text entities

- **Genes:** NR2F2 (nuclear receptor subfamily 2 group F member 2) [NCBI Gene 7026] {aka ARP-1, ARP1, CHTD4, COUPTF2, COUPTFB, COUPTFII}, ERF (ETS2 repressor factor) [NCBI Gene 2077] {aka CHYTS, CRS4, PE-2, PE2}, TFAP2A (transcription factor AP-2 alpha) [NCBI Gene 7020] {aka AP-2, AP-2alpha, AP2TF, BOFS, TFAP2}, RAP1A (RAP1A, member of RAS oncogene family) [NCBI Gene 5906] {aka C21KG, G-22K, KREV-1, KREV1, RAP1, SMGP21}, TEAD4 (TEA domain transcription factor 4) [NCBI Gene 7004] {aka EFTR-2, RTEF1, TCF13L1, TEF-3, TEF3, TEFR-1}, IL6R (interleukin 6 receptor) [NCBI Gene 3570] {aka CD126, HIES5, IL-1Ra, IL-6R, IL-6R-1, IL-6RA}, CEBPB (CCAAT enhancer binding protein beta) [NCBI Gene 1051] {aka C/EBP-beta, IL6DBP, NF-IL6, TCF5}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, CSF1R (colony stimulating factor 1 receptor) [NCBI Gene 1436] {aka BANDDOS, C-FMS, CD115, CSF-1R, CSFR, FIM2}, FOXM1 (forkhead box M1) [NCBI Gene 2305] {aka FKHL16, FOXM1A, FOXM1B, FOXM1C, HFH-11, HFH11}, FLT4 (fms related receptor tyrosine kinase 4) [NCBI Gene 2324] {aka CHTD7, FLT-4, FLT41, LMPH1A, LMPHM1, PCL}, EPAS1 (endothelial PAS domain protein 1) [NCBI Gene 2034] {aka ECYT4, HIF2A, HLF, MOP2, PASD2, bHLHe73}, HIF1A (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 3091] {aka HIF-1-alpha, HIF-1A, HIF-1alpha, HIF1, HIF1-ALPHA, MOP1}, TGFB2 (transforming growth factor beta 2) [NCBI Gene 7042] {aka CAEND2, G-TSF, LDS4, TGF-beta2}, PDGFB (platelet derived growth factor subunit B) [NCBI Gene 5155] {aka IBGC5, PDGF-2, PDGF2, SIS, SSV, c-sis}, GATA4 (GATA binding protein 4) [NCBI Gene 2626] {aka ASD2, TACHD, TOF, VSD1}, FLT1 (fms related receptor tyrosine kinase 1) [NCBI Gene 2321] {aka FLT, FLT-1, VEGFR-1, VEGFR1}, TBX2 (T-box transcription factor 2) [NCBI Gene 6909] {aka VETD}, PRDM1 (PR/SET domain 1) [NCBI Gene 639] {aka BLIMP-1, BLIMP1, PRDI-BF1}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, LMX1B (LIM homeobox transcription factor 1 beta) [NCBI Gene 4010] {aka FSGS10, LMX1.2, NPS1}, ETS1 (ETS proto-oncogene 1, transcription factor) [NCBI Gene 2113] {aka ETS-1, EWSR2, c-ets-1, p54}, TNFRSF1B (TNF receptor superfamily member 1B) [NCBI Gene 7133] {aka CD120b, TBPII, TNF-R-II, TNF-R75, TNFBR, TNFR1B}, TBX3 (T-box transcription factor 3) [NCBI Gene 6926] {aka TBX3-ISO, UMS, XHL}, ARNT (aryl hydrocarbon receptor nuclear translocator) [NCBI Gene 405] {aka ARNT1, HIF-1-beta, HIF-1beta, HIF1-beta, HIF1B, HIF1BETA}, FLI1 (Fli-1 proto-oncogene, ETS transcription factor) [NCBI Gene 2313] {aka BDPLT21, EWSR2, FLI-1, SIC-1}
- **Diseases:** chronic kidney diseases (MESH:D051436), preeclampsia (MESH:D011225)
- **Mutations:** P13K

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12286775/full.md

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Source: https://tomesphere.com/paper/PMC12286775