# Association between Gut Microbiota Composition and Copy Number Variations in Human Genes FAM66D and TAS2R43

**Authors:** Jing Wang, Haoyu Guo, Weiwei Qi, Zhenyi Qiao

PMC · DOI: 10.4014/jmb.2504.04011 · 2025-07-14

## TL;DR

This study explores how copy number variations in specific human genes are linked to the composition of gut microbiota.

## Contribution

The study identifies specific genes whose copy number variations are associated with gut microbiota composition.

## Key findings

- Copy numbers of 50 genes varied among the cohort, with 7 genes showing a link to gut microbiota.
- FAM66D and TAS2R43 CNVs were systematically analyzed for their relationship with gut microbiota.
- A potential connection between human genetic variations and gut microbiota composition is hypothesized.

## Abstract

The impact of the gut microbiota on human health has attracted increasing attention. However, the factors affecting the gut microbiota need more in-depth research. In this work, we analyzed the impact of the gut microbiota at the genetic levels, mainly gene copy number variations (CNVs). We used Permutational Multivariate Analysis of Variance (PERMANOVA, Adonis) analysis to assess the association between CNVs and the gut microbiota. The results showed that copy numbers of 50 genes varied among the cohort. Among them, the CNVs of 7 genes, including TBC1D3L, OR4C6, NPIPB15, PDPR, USP17L7, FAM66D and TAS2R43, were related to the gut microbiota. In addition, among these genes, we systematically analyzed the relationship between CNVs of FAM66D and TAS2R43 with the gut microbiota. We hypothesize that there exists a certain association between genetic information in the human genome (such as CNVs) and human behavior as well as gut microbiota.

## Linked entities

- **Genes:** FAM66D (family with sequence similarity 66 member D) [NCBI Gene 100132923], TAS2R43 (taste 2 receptor member 43) [NCBI Gene 259289], TBC1D3L (TBC1 domain family member 3L) [NCBI Gene 101060376], OR4C6 (olfactory receptor family 4 subfamily C member 6) [NCBI Gene 219432], NPIPB15 (nuclear pore complex interacting protein family member B15) [NCBI Gene 440348], PDPR (pyruvate dehydrogenase phosphatase regulatory subunit) [NCBI Gene 55066], USP17L7 (ubiquitin specific peptidase 17 like family member 7) [NCBI Gene 392197]

## Full-text entities

- **Genes:** FAM66D (family with sequence similarity 66 member D) [NCBI Gene 100132923], PDPR (pyruvate dehydrogenase phosphatase regulatory subunit) [NCBI Gene 55066] {aka PDP3}, USP17L7 (ubiquitin specific peptidase 17 like family member 7) [NCBI Gene 392197], OR4C6 (olfactory receptor family 4 subfamily C member 6) [NCBI Gene 219432] {aka OR11-138}, NPIPB15 (nuclear pore complex interacting protein family member B15) [NCBI Gene 440348] {aka A-761H5.4, NPIPL2}, TBC1D3L (TBC1 domain family member 3L) [NCBI Gene 101060376], TAS2R43 (taste 2 receptor member 43) [NCBI Gene 259289] {aka T2R43, T2R52}
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12283257/full.md

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Source: https://tomesphere.com/paper/PMC12283257