# Identification of a novel microdeletion at 9q21.13 in a family with epilepsy, intellectual disability, and speech disorders and literature review

**Authors:** Liqing Jiang, Jiaqi Li, Aizhong Han, Fei Hou, Xiaotong Wei, Yanjun Tian

PMC · DOI: 10.3389/fgene.2025.1616005 · 2025-07-07

## TL;DR

A new 9q21.13 microdeletion was found in a Chinese family with epilepsy, intellectual disability, and speech disorders, suggesting the RORB gene may be responsible.

## Contribution

A novel 2.35 Mb 9q21.13 microdeletion is identified in a multi-generational family, implicating RORB as a candidate gene for neurodevelopmental disorders.

## Key findings

- A 2.35 Mb microdeletion at 9q21.13 was found in four family members with neurodevelopmental symptoms.
- The RORB gene within the deletion is proposed as a key contributor to the observed clinical features.
- The study expands the known phenotypic and genomic features of 9q21.13 microdeletion syndrome.

## Abstract

At present, there are few reports on 9q21.13 microdeletion syndrome, which is characterized by intellectual disability, epilepsy, autistic behaviour, and recognizable facial features, etc. The aim of this study is to enrich the phenotypic features of 9q21.13 microdeletion syndrome and expand the possible segments of 9q21.13 microdeletion syndrome.

Four individuals from a 3-generation Chinese family with epilepsy, intellectual disability, and speech disorders were recruited in this study. Whole exome sequencing (WES) and chromosome microarray analysis (CMA) techniques were used for genetic testing. The pathogenicity of CNVs was interpreted following the American College of Medical Genetics (ACMG) standards and guidelines.

A 9q21.13 microdeletion with a fragment size of approximately 2.35 Mb was identified in the proband, the proband’s mother and grandmother and even the fetus. And this region encompasses 6 protein coding genes, namely, ALDH1A1, ANXA1, GDA, RORB, TMC1, and ZFAND5.

In this article, we report a girl with epilepsy, intellectual disability, speech disorders, delayed motor development, and autism. We identified a novel 9q21.13 microdeletion with a fragment size of approximately 2.35 Mb in 4 individuals from a 3-generation Chinese family by WES and CMA techniques. Within the region, the RORB gene is a strong candidate gene for complex neurodevelopmental disorders. Herein, we speculate that RORB makes a significant contribution to the clinical phenotypes caused by 9q21.13 microdeletion.

## Linked entities

- **Genes:** ALDH1A1 (aldehyde dehydrogenase 1 family member A1) [NCBI Gene 216], ANXA1 (annexin A1) [NCBI Gene 301], GDA (guanine deaminase) [NCBI Gene 9615], RORB (RAR related orphan receptor B) [NCBI Gene 6096], TMC1 (transmembrane channel like 1) [NCBI Gene 117531], ZFAND5 (zinc finger AN1-type containing 5) [NCBI Gene 7763]
- **Diseases:** epilepsy (MONDO:0005027), intellectual disability (MONDO:0001071), autism (MONDO:0005260)

## Full-text entities

- **Genes:** RORB (RAR related orphan receptor B) [NCBI Gene 6096] {aka EIG15, NR1F2, ROR-BETA, RORbeta, RZR-BETA, RZRB}, ALDH1A1 (aldehyde dehydrogenase 1 family member A1) [NCBI Gene 216] {aka ALDC, ALDH-E1, ALDH1, ALDH11, HEL-9, HEL-S-53e}, TMC1 (transmembrane channel like 1) [NCBI Gene 117531] {aka DFNA36, DFNB11, DFNB7}, ANXA1 (annexin A1) [NCBI Gene 301] {aka ANX1, LPC1}, GDA (guanine deaminase) [NCBI Gene 9615] {aka CYPIN, GAH, GUANASE, NEDASIN}, ZFAND5 (zinc finger AN1-type containing 5) [NCBI Gene 7763] {aka ZA20D2, ZFAND5A, ZNF216}
- **Diseases:** autism (MESH:D001321), intellectual disability (MESH:D008607), epilepsy (MESH:D004827), delayed motor development (MESH:D002658), speech disorders (MESH:D013064)

## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12277573/full.md

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Source: https://tomesphere.com/paper/PMC12277573