# Identification and validation of synergistic drug strategies targeting macrophage polarization in triple-negative breast cancer via single-cell transcriptomics and deep learning

**Authors:** Qi Qi, Wenhao Yang, Liang Li, Yuheng Tang, Yongzhi Chen, Hui Wang, Sun Yingjie, Jialin Shi, Samina Gul, Wenru Tang, Jianyu Pang, Xiaoli Xie

PMC · DOI: 10.1016/j.tranon.2025.102457 · Translational Oncology · 2025-06-27

## TL;DR

This study identifies a new way to predict outcomes in triple-negative breast cancer patients and suggests repurposing finasteride to improve treatment by altering immune cell behavior.

## Contribution

A macrophage-based classifier (MMDCSS) and repurposing finasteride to modulate ZBTB20 for reversing immunosuppression in TNBC.

## Key findings

- MMDCSS (CD93, CHI3L1, ZBTB20) accurately predicts TNBC prognosis with high C-index and AUC.
- Finasteride modulates ZBTB20, reverses M2 macrophage polarization, and enhances doxorubicin efficacy in TNBC models.
- ZBTB20 is identified as a key regulator of macrophage polarization in the TNBC tumor microenvironment.

## Abstract

•A novel macrophage differentiation-based classifier (MMDCSS) accurately predicts prognosis in TNBC patients.•Repurposing finasteride to modulate ZBTB20 offers a clinically viable strategy to reverse immunosuppression and improve TNBC therapy.

A novel macrophage differentiation-based classifier (MMDCSS) accurately predicts prognosis in TNBC patients.

Repurposing finasteride to modulate ZBTB20 offers a clinically viable strategy to reverse immunosuppression and improve TNBC therapy.

Triple-negative breast cancer (TNBC) presents therapeutic challenges due to its immunosuppressive tumor microenvironment (TME) and limited targeted options. Analyzing scRNA-seq data from 24 TNBC patients using integrated transcriptomics, machine-learning, and pseudo-time trajectory mapping, we developed a macrophage differentiation-based classifier (MMDCSS) (CD93, CHI3L1, ZBTB20) with remarkable prognostic accuracy (C-index: 0.929, 3-year AUC: 0.907). Computational pharmacology identified finasteride as a ZBTB20 modulator (binding energy:7.7 kcal/mol) capable of reversing tumor-induced M2 macrophage polarization. Finasteride significantly enhanced doxorubicin efficacy ex vivo and in vivo by reprogramming the TME, reducing M2 macrophage infiltration while promoting an M1 phenotype. Mechanistically, finasteride upregulated ZBTB20, counteracting TNBC-mediated suppression of this M1-associated transcription factor. Our findings establish ZBTB20 as a key regulator of macrophage polarization in TNBC and introduce finasteride as a clinically viable agent to reverse TME immunosuppression. Targeting macrophage polarization via ZBTB20 modulation, particularly by repurposing finasteride, offers a promising therapeutic strategy for TNBC with immediate translational potential.

## Linked entities

- **Genes:** ZBTB20 (zinc finger and BTB domain containing 20) [NCBI Gene 26137], CD93 (CD93 molecule) [NCBI Gene 22918], CHI3L1 (chitinase 3 like 1) [NCBI Gene 1116]
- **Chemicals:** finasteride (PubChem CID 57363), doxorubicin (PubChem CID 31703)
- **Diseases:** triple-negative breast cancer (MONDO:0005494)

## Full-text entities

- **Genes:** CHI3L1 (chitinase 3 like 1) [NCBI Gene 1116] {aka ASRT7, CGP-39, GP-39, GP39, HC-gp39, HCGP-3P}, ZBTB20 (zinc finger and BTB domain containing 20) [NCBI Gene 26137] {aka DPZF, HOF, ODA-8S, PRIMS, ZNF288}, CD93 (CD93 molecule) [NCBI Gene 22918] {aka C1QR1, C1qR(P), C1qRP, CDw93, ECSM3, MXRA4}
- **Diseases:** TNBC (MESH:D064726), tumor (MESH:D009369)
- **Chemicals:** doxorubicin (MESH:D004317), Finasteride (MESH:D018120)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12268103/full.md

## References

51 references — full list in the complete paper: https://tomesphere.com/paper/PMC12268103/full.md

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Source: https://tomesphere.com/paper/PMC12268103