# Bacterial profiling of colorectal cancer biopsies: a culture-based study in Indian patients

**Authors:** Manish Kushwaha, Shubham Chaudhary, Akhilesh Kumar Singh, Govind K. Makharia, Anil Kumar

PMC · DOI: 10.3389/fcimb.2025.1535477 · Frontiers in Cellular and Infection Microbiology · 2025-07-03

## TL;DR

This study isolates and identifies bacteria from colorectal cancer and adjacent normal tissue samples in Indian patients to understand their role in cancer development.

## Contribution

The study uses a culture-based method to profile bacteria in CRC biopsies, offering insights into potential therapeutic targets.

## Key findings

- Enterococcus, Escherichia, Klebsiella, and other bacteria were enriched in tumor biopsies.
- A culture-based approach enables detailed study of individual bacteria in CRC.
- Bacterial profiling may lead to new therapies targeting CRC-related bacteria.

## Abstract

Emerging research has highlighted the significant role of microorganisms in the initiation and progression of colorectal cancer (CRC). However, further investigation is required to elucidate the precise mechanisms by which the microbial community or specific bacteria contribute to carcinogenesis. The present work deals with the isolation and identification of bacteria from nine CRC biopsy samples and nine adjacent normal biopsy samples. Different media, such as brain heart infusion (BHI), anaerobic basal agar (ABA), and trypticase soy agar (TSA), and culture conditions have been manipulated to maximize the isolation of bacteria residing in biopsy samples. A total of 75 bacteria were isolated from the tumor and adjacent site. Enterococcus, Escherichia, Klebsiella, Shigella, Citrobacter, Morganella, and Veillonella have been found to be enriched in most of the tumor biopsies, while biopsies collected from adjacent tissues had Escherichia, Shigella, Enterococcus, and Streptococcus bacteria. A culture-based approach to assessing bacterial diversity offer advantages, enabling the study of individual bacteria to elucidate mechanisms of intestinal carcinogenesis. This approach may provide novel insights into pathology and potentially lead to new therapeutic modalities targeting the specific bacteria implicated in the inflammation and carcinogenesis of CRC.

## Linked entities

- **Diseases:** colorectal cancer (MONDO:0005575)

## Full-text entities

- **Diseases:** CRC (MESH:D015179), tumor (MESH:D009369), inflammation (MESH:D007249), carcinogenesis (MESH:D063646)
- **Chemicals:** ABA (-)
- **Species:** Escherichia coli (E. coli, species) [taxon 562], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Homo sapiens (human, species) [taxon 9606], Streptococcus (genus) [taxon 1301], Enterococcus (genus) [taxon 1350], Veillonella (genus) [taxon 29465], Citrobacter (genus) [taxon 544], Klebsiella (genus) [taxon 570], Shigella (genus) [taxon 620], Morganella (genus) [taxon 108061]

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12267230/full.md

## References

71 references — full list in the complete paper: https://tomesphere.com/paper/PMC12267230/full.md

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Source: https://tomesphere.com/paper/PMC12267230