# FDA-approved drugs as potential covalent inhibitors of key SARS-CoV-2 proteins: an in silico approach

**Authors:** Murat SERİLMEZ, Anwar ABUELRUB, Ismail EROL, Serdar DURDAĞI

PMC · DOI: 10.55730/1300-0152.2741 · Turkish Journal of Biology · 2025-04-07

## TL;DR

This study uses computer modeling to find FDA-approved drugs that could potentially inhibit key SARS-CoV-2 proteins, offering new treatment options for COVID-19.

## Contribution

The novel use of covalent docking and molecular dynamics simulations to repurpose FDA-approved drugs against multiple SARS-CoV-2 targets.

## Key findings

- Bremelanotide, lanreotide, histrelin, and leuprolide show potential as RdRp inhibitors.
- Azlocillin, cefiderocol, and sultamicillin are promising Mpro inhibitors.
- Cefiderocol, cefoperazone, and ceftolozane may inhibit ACE2.

## Abstract

The COVID-19 pandemic caused by SARS-CoV-2 necessitated rapid development of effective therapeutics, prompting this study to identify potential inhibitors targeting key viral and host proteins: RNA-dependent RNA polymerase (RdRp), main protease (Mpro), transmembrane serine protease 2 (TMPRSS2), and angiotensin-converting enzyme 2 (ACE2).

We used covalent docking and molecular dynamics (MD) simulations to screen FDA-approved compounds against these targets using diverse covalent reaction mechanisms. Top-ranking compounds underwent further evaluation through MD simulations to assess binding stability and conformational dynamics.

Several promising drug repurposing candidates were identified: bremelanotide, lanreotide, histrelin, and leuprolide as potential RdRp inhibitors; azlocillin, cefiderocol, and sultamicillin for Mpro inhibition; tenapanor, isavuconazonium, and ivosidenib targeting TMPRSS2; and cefiderocol, cefoperazone, and ceftolozane as potential ACE2 inhibitors.

This study provides valuable insights into repurposing existing drugs as potential COVID-19 therapeutics by targeting crucial viral proteins. However, further experimental validation and preclinical studies are necessary to confirm the efficacy and safety of these compounds before consideration for clinical application.

## Linked entities

- **Proteins:** RNA-dependent RNA polymerase (RNA-dependent RNA polymerase)
- **Chemicals:** bremelanotide (PubChem CID 9941379), lanreotide (PubChem CID 6918011), histrelin (PubChem CID 25077993), leuprolide (PubChem CID 657181), azlocillin (PubChem CID 6479523), cefiderocol (PubChem CID 77843966), sultamicillin (PubChem CID 444022), tenapanor (PubChem CID 71587953), isavuconazonium (PubChem CID 6918606), ivosidenib (PubChem CID 71657455), ceftolozane (PubChem CID 53234134)
- **Diseases:** COVID-19 (MONDO:0100096)

## Full-text entities

- **Genes:** ACE2 (angiotensin converting enzyme 2) [NCBI Gene 59272] {aka ACEH}, ORF1ab (ORF1a polyprotein;ORF1ab polyprotein) [NCBI Gene 43740578], Mpro [NCBI Gene 8673700], TMPRSS2 (transmembrane serine protease 2) [NCBI Gene 7113] {aka PRSS10}
- **Diseases:** COVID-19 (MESH:D000086382)
- **Chemicals:** sultamicillin (MESH:C035444), ceftolozane (MESH:C519491), azlocillin (MESH:D001390), cefiderocol (MESH:C000612166), isavuconazonium (-), tenapanor (MESH:C000599417), ivosidenib (MESH:C000627630), cefoperazone (MESH:D002438)
- **Species:** Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049]

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12266346/full.md

## Figures

17 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12266346/full.md

## References

40 references — full list in the complete paper: https://tomesphere.com/paper/PMC12266346/full.md

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Source: https://tomesphere.com/paper/PMC12266346